Commits · master · Paula Weidemueller / Review - Tanscription Factors · GitLab

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Jul 19, 2022
- Add citation · b8b1f309
  Paula Weidemueller authored 2 years ago
  
  b8b1f309
Jul 26, 2021
- remove pickle from LFS · a837b736
  Paula Weidemueller authored 3 years ago
  
  a837b736
- remove files from LFS · a7fbe825
  Paula Weidemueller authored 3 years ago
  
  a7fbe825
Jul 23, 2021
- add manual curated ID mapping for some TFs · 46946966
  Paula Weidemueller authored 3 years ago
  
  46946966
- remove unnecessary code · 29c7b054
  Paula Weidemueller authored 3 years ago
  
  29c7b054
Jul 05, 2021
- switch position of biased vs unbiased metrics · a2d1264f
  Paula Weidemueller authored 3 years ago
  
  a2d1264f
Jun 28, 2021
- create supplementary figures, fix some typos · 281b2251
  Paula Weidemueller authored 3 years ago
  
  281b2251
Jun 22, 2021
- change axis label to n_TFs · 02ecafa1
  Paula Weidemueller authored 3 years ago
  
  02ecafa1
Jun 15, 2021
- redraw Figure 4 and 5 · c000f5c8
  Paula Weidemueller authored 3 years ago
  
  c000f5c8
Jun 14, 2021
- add ensembl ID to Suppl. table 2 · 28cf762a
  Paula Weidemueller authored 3 years ago
  
  28cf762a
- remove duplicated rows · e6cd1937
  Paula Weidemueller authored 3 years ago
  
  e6cd1937
Jun 13, 2021
- display top 15 protein families, merge families based on name and not intersection · 665a03a5
  Paula Weidemueller authored 3 years ago
  
  665a03a5
Jun 10, 2021
- strip cell output · 1b36f4ba
  Paula Weidemueller authored 3 years ago
  
  1b36f4ba
- track csv and tsv with LFS · 3117f9e4
  Paula Weidemueller authored 3 years ago
  
  3117f9e4
- add option to specify TF list · dc064b03
  Paula Weidemueller authored 3 years ago
  
  dc064b03
Apr 01, 2021
- update citation of BioMart · 3db87188
  Paula Weidemueller authored 4 years ago
  
  3db87188
Mar 23, 2021
- Merge branch 'master' of gitlab.ebi.ac.uk:pweide/review-tanscription-factors · d577cd18
  Paula Weidemueller authored 4 years ago
  
  d577cd18
- update citation of Ensembl · cbf6b9d9
  Paula Weidemueller authored 4 years ago
  
  cbf6b9d9
- Add LICENSE · df90ca9f
  Paula Weidemueller authored 4 years ago
  
  df90ca9f
- refactor base ID variable · d0594502
  Paula Weidemueller authored 4 years ago
  
  d0594502
- add information on how the figures were generated · 3fd9199c
  Paula Weidemueller authored 4 years ago
  
  3fd9199c
Mar 22, 2021
- improve class description · f9600a3b
  Paula Weidemueller authored 4 years ago
  
  f9600a3b
Mar 20, 2021
- replace label of regulatory phosphosites to functional phosphosites · 2bfd91d9
  Paula Weidemueller authored 4 years ago
  
  2bfd91d9
- add adobe illustrator processed figures · 8f9942e9
  Paula Weidemueller authored 4 years ago
  
  8f9942e9
- add python package requirements · f1e6b739
  Paula Weidemueller authored 4 years ago
  
  f1e6b739
- change axis label for regulatory phosphosites to functional phosphosites · 458e6de3
  Paula Weidemueller authored 4 years ago
  
  458e6de3
- add R script to generate Figure 3 · ecf7bec6
  Paula Weidemueller authored 4 years ago
  
  ecf7bec6
Mar 19, 2021
- update gitignore · 9fae1ae3
  Paula Weidemueller authored 4 years ago
  
  9fae1ae3
- explain table columns · 62719d25
  Paula Weidemueller authored 4 years ago
  
  62719d25
Mar 18, 2021
- make figures and tables · 20c83187
  Paula Weidemueller authored 4 years ago
  
  20c83187
- load mapping table by specifying path in calling script, remove row if gene_id_data is NaN · 474f4110
  Paula Weidemueller authored 4 years ago
  
  474f4110
- correct explanation for generating regulatory counts · 6053384a
  Paula Weidemueller authored 4 years ago
  
  6053384a
- fix the display of n_TFs on the x axis · 58e0f0e8
  Paula Weidemueller authored 4 years ago
  
  58e0f0e8
- remove number of intersecting TFs and remove y axis tick labels if all data is shown · b88a03bf
  Paula Weidemueller authored 4 years ago
  
  b88a03bf
Mar 17, 2021
- separate display of NaN vs 0 entries into two bins · 7d8b7884
  Paula Weidemueller authored 4 years ago
  
  7d8b7884
- add plot functions for the final figures · 02c8a5e9
  Paula Weidemueller authored 4 years ago
  
  02c8a5e9
Mar 16, 2021
- replace changing direclty with relative paths · cdc2de38
  Paula Weidemueller authored 4 years ago
  
  cdc2de38
- add gitignore · d261e4a4
  Paula Weidemueller authored 4 years ago
  
  d261e4a4
- generate protein sets with phosphorylation information · bee54e55
  Paula Weidemueller authored 4 years ago
  
  bee54e55
- add test if regulatory dataframes are empty · c2baef87
  Paula Weidemueller authored 4 years ago
  
  c2baef87