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Mohamed Alibi
picard
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patch-1
f4ebeee2
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Create picard.sh
·
Jun 01, 2016
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yf_MakeVariantCallingMetircsUseMergableMetrics
f04be0b3
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- converting VariantCallingMetircs to mergable metrics...need to test
·
Jun 01, 2016
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dek_docs6
779066b4
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Merge branch 'dek_docs6' of github.com:broadinstitute/picard into dek_docs6
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May 31, 2016
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dek_docs7
62d9e8cd
·
Fixed text of TargetedPcrMetrics.java per YF's suggestions
·
May 31, 2016
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lh_representative_read_tags
584d9740
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experimenting to get the codec and casting to work for ReadEndsForMarkDuplicatesSetSizeTags
·
May 31, 2016
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master
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protected
1c38bfcf
·
Merge pull request #551 from broadinstitute/dr_fix_sbt_testng_plugin_resolution
·
May 31, 2016
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lh_dup_set_size
8041fbe0
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changes to Duplication Metrics output. Also debugging efforts for read_pairs_examined metric
·
May 28, 2016
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gh-pages
32ca97bb
·
Adding website files for 2.4.1
·
May 27, 2016
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yf_moveFindN_out_of_personal
4384cc9b
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fixed logging.
·
May 21, 2016
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jc_htsjdk_from_maven
07263c43
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Fix copyright date
·
May 20, 2016
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yf_tumor_aware_fp
c8ab2bde
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- responded to @nh13's review comments. Thanks!
·
May 15, 2016
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yf_move_FindMV_from_private_to_public
908511b0
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- moved FindMendelianViolations from the private repository
·
May 15, 2016
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sh_insertSize_binWidth_issue
996d056d
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fixed tests for LIB 41734 and RG 62A79AAXX100907.7, added accumlevel, fixed edge case error
·
May 02, 2016
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lh_duplicates
0935cd84
·
modified MarkDuplicates that returns a histogram of duplicate set size and...
·
Apr 24, 2016
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lh_duplicate_set_count
f3c671c8
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Adding a new tool for collecting metrics on independent replicates and UMIs (#482)
·
Apr 20, 2016
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yf_fix_CompareSam
82e0125c
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Fixed bug in CompareSams that occurs when two read mates have the same genomic start position.
·
Apr 16, 2016
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yf_add_CLP_FixNmAndUqTags
5cd6af16
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review comments (take 3).
·
Apr 15, 2016
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eb_add_indel_rate_to_rqc
cd288e1a
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Added fields to Rapid QC metrics for tracking the PF indel rate.
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Apr 08, 2016
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gvda_issue+pr_templates
34cb183d
·
Issue and pull-request templates
·
Apr 08, 2016
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yf_Make_SortSam_HonorCommonParameters
20687bfe
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Makes SortSam honor the (common) input parameters CREATE_INDEX and CREATE_MD5.
·
Apr 07, 2016
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