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Mohamed Alibi
picard
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bw2-no-change-in-clp-output-tester
6a6524b1
·
Initial checkin of NoChangeInCommandLineProgramOutputTester
·
Sep 15, 2014
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yf_genotype_concordance
a5dd4c18
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modified logic of determine state.
·
Sep 30, 2014
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yf_detect_cancer
de42e6ad
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finished writing the newest version of the cancer/contam detection algorithm.
·
Oct 24, 2014
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nh_mark_duplicates_with_low_q_end
e46438dc
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blah
·
Dec 18, 2014
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db_pad_hopping
f60c7908
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Things?
·
Apr 03, 2015
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jg_data_quality_check
94a2048c
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A little program to match what happens in DataQualityCheck from Zamboni except...
·
Apr 07, 2015
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tf_fix_asm_cmm
84417eb7
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Fix bug introduced in PR #188 that causes CollectAlignmentSummaryMetrics to...
·
Apr 07, 2015
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jc_ga4gh_sbt
98ec56a9
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Added maven dep from gatk-tools-java for picardopt build in sbt. Exclude it in...
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May 11, 2015
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aw_length_1_exon
21aa53ee
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Fix test for zero-length exon.
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May 28, 2015
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jc_full_test
2fb8ef12
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Added full test to check illumina directory.
·
Jun 03, 2015
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bt_dockerfile
50fd1fb4
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Added a dockerfile to picard
·
Jul 15, 2015
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nh_c_r_s_p_test
91d75ead
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Fixing previous mistake with scheme logic
·
Jul 22, 2015
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ds_fix_dockerfile
5ec51d00
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Remove entry point from docker file because it's not supported by Cromwell
·
Jul 29, 2015
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eb_fix_reversed_genotypes_in_liftover
dde1e503
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Fixed LiftoverVcf to properly handle Genotypes when the Alleles have been reverse complemented.
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Aug 11, 2015
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bcmaster
ee7f4257
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Merge pull request #261 from broadinstitute/gg_RevGenotypeConcordance_for_bcmaster_pic
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Aug 20, 2015
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staging
8fd46bd8
·
Merge pull request #282 from broadinstitute/yf_add_package_annotation_test
·
Sep 10, 2015
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yf_make_picardtest_look_nicer
042bc0fd
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make the picard commndline test look nicer
·
Sep 11, 2015
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tf_vcwb_stringency
6d73b2bd
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Modified CommandLineProgram to, when the VALIDATION_STRINGENCY is either...
·
Oct 08, 2015
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kb_gcBiasMultiCollectionFix
a5d6f36b
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GcBias doesn't need to be collected at multiple levels in...
·
Oct 27, 2015
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kb_gcAlignedReadsOverflowBug
c0f5418f
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Ran into a bug in CollectGcBias with a 100X coverage genome where the number...
·
Nov 03, 2015
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