Added "synchronise-schemas" step in release workflow and fix error in archive function

slurm_jobs/chebi_data_management_process.sh

+#!/bin/bash
+
+#SBATCH --time=2:00:00
+#SBATCH --mem=16G
+#SBATCH --mail-type=all
+#SBATCH --output=<LOG_FILE>
+#SBATCH --error=<LOG_FILE>
+#SBATCH --job-name=<JOB_NAME>
+#SBATCH --partition=datamover
+#SBATCH --export=SINGULARITY_DOCKER_USERNAME=<READ_DOCKER_USERNAME>,SINGULARITY_DOCKER_PASSWORD=<READ_DOCKER_TOKEN>,DBT_PROJECT_DIR=/chebi_data_management,DBT_PROFILES_DIR=/chebi_data_management
+
+
+# Purge all modules, just in case
+module purge
+
+# Variables used by chebi-data-management container.
+TMP_DBT_LOGS_FOLDER=$(pwd)/logs
+TMP_DBT_TARGET_FOLDER=$(pwd)/target
+TMP_DBT_PACKAGES_FOLDER=$(pwd)/dbt_packages
+DOCKER_TAG=<DOCKER_TAG>
+MODELS_TO_SYNC=<MODELS_TO_SYNC>
+
+# This function execute the process to synchronize the schemas needed to generate the ontology and the DUMPS
+function execute_chebi_data_management() {
+    mkdir -p ${TMP_DBT_LOGS_FOLDER} ${TMP_DBT_TARGET_FOLDER} ${TMP_DBT_PACKAGES_FOLDER}
+
+    singularity cache clean -f && \
+    singularity pull -F chebi_data_management.sif docker://dockerhub.ebi.ac.uk/chembl/chebi/chebi-2.0/chebi-data-management:${DOCKER_TAG} && \
+    singularity run \
+        -B ${TMP_DBT_LOGS_FOLDER}:/chebi_data_management/logs \
+        -B ${TMP_DBT_TARGET_FOLDER}:/chebi_data_management/target \
+        -B ${TMP_DBT_PACKAGES_FOLDER}:/chebi_data_management/dbt_packages \
+        chebi_data_management.sif dbt run --models $MODELS_TO_SYNC --target postgres --vars "out_schema: $MODELS_TO_SYNC"
+}
+
+execute_chebi_data_management
\ No newline at end of file