Eubopen: add more properties to probe profile and try to redirect target from chembl id

nuxt.config.js

@@ -46,6 +46,9 @@ export default {
       process.env.EUBOPEN_TARGET_REPORT_CARDS_BASE_URL || '/target',
     eubopenTextSearchBaseUrl:
       process.env.EUBOPEN_TEXT_SEARCH_BASE_URL || '/search',
+    assayReportCardsBaseUrl:
+      process.env.ASSAY_REPORT_CARDS_BASE_URL ||
+      'https://wwwdev.ebi.ac.uk/chembl/assay_report_card',
   },
 
   // Global CSS: https://go.nuxtjs.dev/config-css

package-lock.json

@@ -3479,8 +3479,7 @@
     "asynckit": {
       "version": "0.4.0",
       "resolved": "https://registry.npmjs.org/asynckit/-/asynckit-0.4.0.tgz",
-      "integrity": "sha1-x57Zf380y48robyXkLzDZkdLS3k=",
-      "dev": true
+      "integrity": "sha1-x57Zf380y48robyXkLzDZkdLS3k="
     },
     "at-least-node": {
       "version": "1.0.0",
@@ -4706,7 +4705,6 @@
       "version": "1.0.8",
       "resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.8.tgz",
       "integrity": "sha512-FQN4MRfuJeHf7cBbBMJFXhKSDq+2kAArBlmRBvcvFE5BB1HZKXtSFASDhdlz9zOYwxh8lDdnvmMOe/+5cdoEdg==",
-      "dev": true,
       "requires": {
         "delayed-stream": "~1.0.0"
       }
@@ -5776,8 +5774,7 @@
     "delayed-stream": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/delayed-stream/-/delayed-stream-1.0.0.tgz",
-      "integrity": "sha1-3zrhmayt+31ECqrgsp4icrJOxhk=",
-      "dev": true
+      "integrity": "sha1-3zrhmayt+31ECqrgsp4icrJOxhk="
     },
     "depd": {
       "version": "1.1.2",
@@ -7566,6 +7563,16 @@
       "integrity": "sha1-+8cfDEGt6zf5bFd60e1C2P2sypE=",
       "dev": true
     },
+    "form-data": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/form-data/-/form-data-4.0.0.tgz",
+      "integrity": "sha512-ETEklSGi5t0QMZuiXoA/Q6vcnxcLQP5vdugSpuAyi6SVGi2clPPp+xgEhuMaHC+zGgn31Kd235W35f7Hykkaww==",
+      "requires": {
+        "asynckit": "^0.4.0",
+        "combined-stream": "^1.0.8",
+        "mime-types": "^2.1.12"
+      }
+    },
     "fragment-cache": {
       "version": "0.2.1",
       "resolved": "https://registry.npmjs.org/fragment-cache/-/fragment-cache-0.2.1.tgz",

package.json

@@ -18,6 +18,7 @@
     "core-js": "^3.8.3",
     "d3": "^6.7.0",
     "dotenv": "^8.2.0",
+    "form-data": "^4.0.0",
     "nuxt": "^2.14.12",
     "vue-apexcharts": "^1.6.1"
   },

pages/target/_id.vue

@@ -3,31 +3,70 @@
 </template>
 
 <script>
+import IndexNames from '~/web-components-submodule/standardisation/IndexNames.js'
 import TargetReportCard from '~/components/report_cards/target/TargetReportCard.vue'
 import MetadataLoader from '~/web-components-submodule/metadata/MetadataLoader.js'
 import EntityNames from '~/web-components-submodule/standardisation/EntityNames.js'
+import ESProxyService from '~/web-components-submodule/services/ESProxyService.js'
+import LinksToEntities from '~/web-components-submodule/standardisation/LinksToEntities.js'
 
 export default {
   components: {
     TargetReportCard,
   },
   layout: 'reportCard',
-  async asyncData({ $axios, error, params }) {
-    try {
-      const docSource = ['pref_name']
-      const result = await MetadataLoader.getMetadataForEntity(
-        EntityNames.EubopenTarget.entityID,
-        params.id,
-        docSource
-      )
-      return {
-        rawMetadata: result.data._source,
+  async asyncData({ $axios, error, params, redirect }) {
+    const entityID = EntityNames.EubopenTarget.entityID
+    const receivedID = params.id
+    let itemID = receivedID
+
+    const isChemblID = /^CHEMBL\d+$/.test(receivedID)
+
+    // If it is a chembl id, get the eubopen id and redirect
+    if (isChemblID) {
+      try {
+        const indexName = IndexNames.getIndexNameFromEntityID(entityID)
+        const docSource = ['_id']
+        const customIDProperty = 'target_chembl_id'
+
+        const docResponse = await ESProxyService.getESDocument(
+          indexName,
+          receivedID,
+          docSource,
+          customIDProperty
+        )
+
+        itemID = docResponse.data._id
+        const reportCardURL = LinksToEntities[entityID].getLinkToReportCard(
+          itemID
+        )
+        console.log('going to redirect: ', reportCardURL)
+        redirect(reportCardURL)
+        return
+      } catch (e) {
+        error({
+          statusCode: 404,
+          message: `No ${EntityNames.EubopenTarget.singularEntityName} found with target_chembl_id ${params.id}`,
+        })
+      }
+    } else {
+      console.log('show report card for : ', itemID)
+      try {
+        const docSource = ['pref_name']
+        const result = await MetadataLoader.getMetadataForEntity(
+          entityID,
+          itemID,
+          docSource
+        )
+        return {
+          rawMetadata: result.data._source,
+        }
+      } catch (e) {
+        error({
+          statusCode: 404,
+          message: `No ${EntityNames.EubopenTarget.singularEntityName} found with id ${params.id}`,
+        })
       }
-    } catch (e) {
-      error({
-        statusCode: 404,
-        message: `No ${EntityNames.EubopenTarget.singularEntityName} found with id ${params.id}`,
-      })
     }
   },
   head() {

web-components-submodule @ 6caa04a1

-Subproject commit 11257a066e00627de771f1aa223e4325197e75a1
+Subproject commit 6caa04a10333c2bc750b89d8cafd7d3951acc16a