Add deployment to staging

.gitlab-ci.yml

@@ -18,6 +18,7 @@ stages:
   - build
   - test_and_qa
   - prepare_config
+  - deploy
 
 
 # ----------------------------------------------------------------------------------------------------------------------
@@ -77,3 +78,37 @@ prepare_config_staging:
   artifacts:
     paths:
       - ${ENV_STAGING_FILE_PATH}
+
+# ----------------------------------------------------------------------------------------------------------------------
+# Deploy to staging
+# ----------------------------------------------------------------------------------------------------------------------
+deploy_to_staging:
+  stage: deploy
+  image:
+    name: lachlanevenson/k8s-kubectl:latest
+    entrypoint: ["/bin/sh", "-c"]
+  only:
+    - staging
+  tags:
+    - docker
+  script:
+  - set -x
+  - echo "$KUBE_CA_PEM_HX" > "$(pwd)/kube.ca.pem"
+  - kubectl config set-cluster ${KUBE_CLUS_NAME_HX} --server="${KUBE_URL_HX}" --certificate-authority="$(pwd)/kube.ca.pem"
+  - kubectl config set-credentials ${KUBE_USER_HX} --token="${KUBE_TOKEN_HX}"
+  - kubectl config set-context ${CHEMBL_NS_STAGING} --cluster=${KUBE_CLUS_NAME_HX} --user=${KUBE_USER_HX}
+  - kubectl config use-context ${CHEMBL_NS_STAGING}
+  - echo ${CHEMBL_NS_STAGING} ${KUBE_URL_HX} ${KUBE_CLUS_NAME_HX} ${KUBE_USER_HX}
+  - kubectl get pods -n ${CHEMBL_NS_STAGING}
+  - kubectl create secret generic ${ENV_SECRET_NAME_STAGING} --from-file=.env=${ENV_STAGING_FILE_PATH} -o yaml -n ${CHEMBL_NS_STAGING} --dry-run=client | kubectl apply -f -
+  - cat ${ENV_STAGING_FILE_PATH}
+  - sed -i "s~<NAMESPACE>~${CHEMBL_NS_STAGING}~g" k8s-deployment.yaml
+  - sed -i "s~<HTTP_PROXY>~${HTTP_PROXY_HX}~g" k8s-deployment.yaml
+  - sed -i "s~<HTTPS_PROXY>~${HTTPS_PROXY_HX}~g" k8s-deployment.yaml
+  - sed -i "s~<NO_PROXY>~${NO_PROXY_HX_DEFAULT}~g" k8s-deployment.yaml
+  - sed -i "s~<SERVER_IMAGE_TAG>~${SERVER_IMAGE_TAG}~g" k8s-deployment.yaml
+  - sed -i "s~<ENV_SECRET_NAME>~${ENV_SECRET_NAME_STAGING}~g" k8s-deployment.yaml
+  - sed -i "s~<NODE_PORT>~${EUBOPEN_WEB_PORT_STAGING}~" k8s-deployment.yaml
+  - cat k8s-deployment.yaml
+  - kubectl apply -n ${CHEMBL_NS_STAGING} -f k8s-deployment.yaml
+  - kubectl get pods -n ${CHEMBL_NS_STAGING}