Commit 36a2e1a4 authored by Leo Gordon's avatar Leo Gordon
Browse files

added changelog for rel.66

parent ac793670
......@@ -13,6 +13,313 @@ Summary:
any program, algorithm, or parallel processing job control system. It is
not bound to any processing 'farm' system and can be adapted to any GRID.
---------------------[after EnsEMBL rel.66]----------------------------------------------------------------
2012-01-31 10:58 lg4
* sql/triggers.mysql: an optimization: do not touch analysis_stats
when job.status or job.analysis is not changing
2012-01-20 16:33 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/,
sql/tables.sql: changes for rel.66
2011-12-08 13:07 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/ checked in
by mistake last time; took back the changes now
2011-12-08 12:08 lg4
* modules/Bio/EnsEMBL/Hive/,
scripts/, scripts/,
sql/patch_2011-12-08.sql, sql/tables.sql, sql/tables.sqlite,
sql/triggers.mysql, sql/triggers.sqlite: Removed
maximise_concurrency and added analysis_stats.priority to guide
the scheduler; improved scheduler and LSF meadow
2011-11-29 17:49 lg4
* modules/Bio/EnsEMBL/Hive/,
sql/patch_2011-11-29.sql, sql/tables.sql, sql/tables.sqlite: An
extension to the dataflow-rule-driven semaphores ('2->A', '3->A'
and 'A->1' notation)
2011-11-29 12:59 lg4
* modules/Bio/EnsEMBL/Hive/RunnableDB/ removed
'sema_fan_branch_code' parameter since you can now set up a
semaphored group via PipeConfig' language
2011-11-28 09:57 lg4
* modules/Bio/EnsEMBL/Hive/ no need to check for
semaphores when state is already DONE or PASSED_ON
2011-11-28 09:57 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/ making sure
semaphores are correctly propagated through gc_dataflow and
2011-11-25 10:22 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/ allow
more than one input_id_template per analysis
2011-11-24 20:12 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/ bugfix:
funnel_branch is no longer initialized to 1 when undef
2011-11-24 20:05 lg4
* modules/Bio/EnsEMBL/Hive/ bugfix: correct counting of
total_job_number in non-trigger mode
2011-11-24 12:37 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/ bugfix -
branch_name_2_code should return 1 on undef
2011-11-23 17:05 lg4
* modules/Bio/EnsEMBL/Hive/Utils/:, Graph/ show
the dataflow-generated semaphores on the diagram
2011-11-23 15:52 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/:, bugfix: object adaptor now correctly
reconstructs dbID
2011-11-23 12:23 lg4
* modules/Bio/EnsEMBL/Hive/: PipeConfig/,
PipeConfig/, RunnableDB/LongMult/README,
RunnableDB/LongMult/ merge the two ways of running
the LongMult pipeline into one
2011-11-23 11:57 lg4
* modules/Bio/EnsEMBL/Hive/,
sql/patch_2011-11-23.sql, sql/tables.sql, sql/tables.sqlite:
integrated semaphored fans/funnels into dataflow rules
2011-11-22 14:47 lg4
* modules/Bio/EnsEMBL/Hive/ this value was
returned but never used
2011-11-21 16:44 lg4
* modules/Bio/EnsEMBL/Hive/:,,,
DBSQL/ remove the per-worker batch_size
2011-11-21 16:40 lg4
* scripts/:, remove the per-worker
batch_size flag from scripts
2011-11-17 14:56 lg4
* modules/Bio/EnsEMBL/Hive/,
sql/triggers.mysql, sql/triggers.sqlite: make num_running_workers
updatable by triggers + better updates during worker check-in
2011-11-10 14:30 lg4
* modules/Bio/EnsEMBL/Hive/:,
DBSQL/ these four methods were neither
used by Hive nor by Compara code
2011-11-04 12:05 lg4
* docs/eHive_install_usage.txt,
modules/Bio/EnsEMBL/Hive/DBSQL/ DBI with versions
older than 1.6 are not supported
2011-10-19 09:54 db8
* modules/Bio/EnsEMBL/Hive/Meadow/, scripts/
WGA/Projection used for CHIMP2.1.4
2011-10-15 10:20 lg4
* sql/: tables.sql, tables.sqlite: release 65
2011-09-23 11:53 lg4
An example pipeline that turns lines of a file into jobs and runs
them on the farm
2011-09-20 21:15 lg4
* modules/Bio/EnsEMBL/Hive/ extend for other schema
2011-09-09 09:57 lg4
* sql/tables.sql: analysis_data may be overcrowded with inserts
during dataflow with input_id longer than 255 characters
2011-09-05 17:18 lg4
* docs/long_mult_example_pipeline.txt: couple of typos
2011-09-05 16:50 lg4
* docs/eHive_install_usage.txt: checkout seems to work better than
2011-09-01 16:12 lg4
* modules/Bio/EnsEMBL/Hive/:,
PipeConfig/, PipeConfig/,
PipeConfig/ Incorporate ENV hash into
the tree of possible options in order to be able to "require" a
value. And a bit of config inheritance cleanup.
2011-08-25 20:37 lg4
* modules/Bio/EnsEMBL/Hive/:, RunnableDB/,
RunnableDB/, RunnableDB/,
RunnableDB/ Switching from DBI to DBConnection;
data_dbc() as the main focus point; examples of
basic building blocks
2011-08-18 15:28 lg4
* modules/Bio/EnsEMBL/Hive/RunnableDB/:,, show query/cmd/filename when debug is on
2011-08-18 15:23 lg4
* modules/Bio/EnsEMBL/Hive/Utils/ sqlite databases do not
have a host name, so nothing to display here
2011-08-15 10:58 lg4
* sql/: tables.sql, tables.sqlite: the schema did not allow more
than one job_message per second from one attempt. This limitation
has been removed
2011-07-26 17:35 lg4
* modules/Bio/EnsEMBL/Hive/ allow standalone jobs to
emit warnings
2011-07-26 11:45 lg4
* sql/: tables.sql, tables.sqlite: for the production of rel.64
2011-07-20 19:40 lg4
* sql/: triggers.mysql, triggers.sqlite: bugfix: more foolproof
maths in triggers
2011-07-15 16:42 lg4
* modules/Bio/EnsEMBL/Hive/:, moved Worker's
call to Queen->safe_synchronize_AnalysisStats into for
2011-07-15 15:13 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/ now it
should properly refresh data in the existing object
2011-07-15 14:59 lg4
* modules/Bio/EnsEMBL/Hive/ do not update counters
2011-07-15 14:23 lg4
* modules/Bio/EnsEMBL/Hive/:, formatting
and cleanup
2011-07-15 14:21 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/,
sql/triggers.mysql, sql/triggers.sqlite: more flexible approach:
allows to add triggers later by simply by sourcing the triggers
2011-07-15 11:44 lg4
* modules/Bio/EnsEMBL/Hive/:,
DBSQL/ perform worker counting centrally
in the Queen
2011-07-15 11:14 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/ do not
update these fields when triggers in place
2011-07-14 15:58 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/ added a
new beekeeper_extra_cmdline_options() interface method for
passing cmdline options to
2011-07-14 15:26 lg4
* modules/Bio/EnsEMBL/Hive/:, DBSQL/,
PipeConfig/ optional (cmdline-controlled,
off-by-default) support of job-counting triggers
2011-07-14 12:52 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/,
sql/foreign_keys.mysql, sql/foreign_keys.sql,
sql/procedures.mysql, sql/procedures.sql: renamed procedures.sql
and foreign_keys.sql into .mysql equivalents
2011-07-14 12:47 lg4
* sql/: triggers.mysql, triggers.sqlite: experimental: do the job
counting immediately by SQL triggers rather than periodically by
Perl code
2011-07-13 17:24 lg4
* modules/Bio/EnsEMBL/Hive/, scripts/
allow automatic dataflow into tables as well
13.July, 2011 : Leo
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