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ensembl-gh-mirror
ensembl-hive
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41864ab2
Commit
41864ab2
authored
Mar 24, 2010
by
Leo Gordon
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full name for family_pipeline.conf
parent
b0a8c2c4
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41864ab2
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@@ -22,17 +22,17 @@ Summary:
Module-wide, pipeline-wide, analysis-wide and job-wide parameters and their precedence.
* A new init_pipeline.pl script to create and populate pipelines from a perl hash structure.
Tested with long_mult_pipeline.conf and family_pipeline.conf . It works.
Tested with
ensembl-hive/docs/
long_mult_pipeline.conf and
ensembl-compara/scripts/family/
family_pipeline.conf . It works.
* Bio::EnsEMBL::Hive::RunnableDB::SystemCmd now supports parameter substitution via #param_name# patterns.
See usage examples in the family_pipeline.conf
See usage examples in the
ensembl-compara/scripts/family/
family_pipeline.conf
* There is a new Bio::EnsEMBL::Hive::RunnableDB::SqlCmd that does that it says,
and also supports parameter substitution via #param_name# patterns.
See usage examples in the family_pipeline.conf
See usage examples in the
ensembl-compara/scripts/family/
family_pipeline.conf
* Bio::EnsEMBL::Hive::RunnableDB::JobFactory has 3 modes of operation: inputlist, inputfile, inputquery.
See usage examples in the family_pipeline.conf
See usage examples in the
ensembl-compara/scripts/family/
family_pipeline.conf
* some rewrite of the Queen/Adaptors code to give us more developmental flexibility
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@@ -40,7 +40,7 @@ Summary:
- partially tested, has some quirks, waiting for a more serious test by Albert
* support for resource requirements in SQL schema, API and on init_pipeline config file level
Tested in the family_pipeline.conf . It works.
Tested in the
ensembl-compara/scripts/family/
family_pipeline.conf . It works.
3 December, 2009 : Leo Gordon
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