Commit 5d05b24f authored by Leo Gordon's avatar Leo Gordon
Browse files

unused variables removed

parent 30cccdb4
......@@ -85,13 +85,9 @@ $self->{'db_conf'} = {};
$self->{'db_conf'}->{'-user'} = 'ensro';
$self->{'db_conf'}->{'-port'} = 3306;
$self->{'analysis_id'} = undef;
$self->{'logic_name'} = 'cmd_hive_analysis';
$self->{'module'} = 'Bio::EnsEMBL::Hive::RunnableDB::SystemCmd';
$self->{'parameters'} = '{}';
$self->{'outdir'} = undef;
$self->{'beekeeper'} = undef;
$self->{'process_id'} = undef;
my $conf_file;
my ($help, $host, $user, $pass, $dbname, $port, $adaptor, $url);
......@@ -104,14 +100,8 @@ GetOptions('help' => \$help,
'dbuser=s' => \$user,
'dbpass=s' => \$pass,
'dbname=s' => \$dbname,
'analysis_id=i' => \$self->{'analysis_id'},
'logic_name=s' => \$self->{'logic_name'},
'module=s' => \$self->{'module'},
'limit=i' => \$self->{'job_limit'},
'lifespan=i' => \$self->{'lifespan'},
'outdir=s' => \$self->{'outdir'},
'bk=s' => \$self->{'beekeeper'},
'pid=s' => \$self->{'process_id'},
'input_id=s' => \$self->{'input_id'},
'parameters=s' => \$self->{'parameters'},
'inputfile=s' => \$self->{'inputfile'},
......@@ -126,8 +116,6 @@ GetOptions('help' => \$help,
'debug=s' => \$self->{'debug'},
);
$self->{'analysis_id'} = shift if(@_);
if ($help) { usage(); }
my $DBA;
......
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