bugfix

modules/Bio/EnsEMBL/Hive/RunnableDB/LongMult/Readme.txt

@@ -18,10 +18,6 @@
 
 # 0. Cache MySQL connection parameters in a variable (they will work as eHive connection parameters as well) :
 export MYCONN="--host=hostname --port=port_number --user=username --password=secret"
-#
-# or, if you have parameters defined using group-suffixes:
-export MYCONN="--defaults-group-suffix=_compara1"
-
 
 # 1. Create an empty database:
 mysql $MYCONN -e 'DROP DATABASE IF EXISTS long_mult_test'

scripts/beekeeper.pl

@@ -71,7 +71,7 @@ sub main {
                'host|dbhost=s'     => \$self->{'db_conf'}->{'-host'},
                'port|dbport=i'     => \$self->{'db_conf'}->{'-port'},
                'user|dbuser=s'     => \$self->{'db_conf'}->{'-user'},
-               'pass|dbpass=s'     => \$self->{'db_conf'}->{'-pass'},
+               'password|dbpass=s'     => \$self->{'db_conf'}->{'-pass'},
                'database|dbname=s' => \$self->{'db_conf'}->{'-dbname'},
 
                     # loop control

scripts/runWorker.pl

@@ -43,7 +43,7 @@ GetOptions('help'           => \$help,
            'host|dbhost=s'  => \$host,
            'port|dbport=i'  => \$port,
            'user|dbuser=s'  => \$user,
-           'pass|dbpass=s'  => \$pass,
+           'password|dbpass=s'  => \$pass,
            'database|dbname=s'  => \$dbname,
            'job_id=i'       => \$self->{'job_id'},
            'analysis_id=i'  => \$self->{'analysis_id'},