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ensembl-gh-mirror
ensembl-hive
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6d92485a
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6d92485a
authored
11 years ago
by
Matthieu Muffato
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Clearer documentation for DatabaseDumper
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modules/Bio/EnsEMBL/Hive/RunnableDB/DatabaseDumper.pm
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modules/Bio/EnsEMBL/Hive/RunnableDB/DatabaseDumper.pm
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modules/Bio/EnsEMBL/Hive/RunnableDB/DatabaseDumper.pm
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6d92485a
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@@ -30,20 +30,27 @@ The following parameters are accepted:
- output_file [string] : the file to write the dump to
The following table describes how the various options combine:
(T means table_list, EL exclude_list, EH exclude_ehive)
(l+ is the list of included tables, l- of excluded tables)
T EL EH l+ l-
+ 1 0 0 T = all except T
+ 0 0 TH 0 = T and H
0 0 0 0 0 = all
0 1 0 H 0 = H
+ 1 1 0 TH = all except T and H
+ 0 1 T H = T (minus H)
0 0 1 0 H = all except H
0 1 1 0 0 = nothing
If "table_list" is undefined or maps to an empty list, the list
of tables to be dumped is decided accordingly to "exclude_list" (EL)
and "exclude_ehive" (EH). "exclude_list" controls the whole list of
non-eHive tables.
EL EH List of tables to dump
0 0 => all the tables
0 1 => all the tables, except the eHive ones
1 0 => all the tables, except the non-eHive ones = only the eHive tables
1 1 => both eHive and non-eHive tables are excluded = nothing is dumped
If "table_list" is defined to non-empty list T, the table of decision is:
EL EH List of tables to dump
0 0 => all the tables in T + the eHive tables
0 1 => all the tables in T
1 0 => all the tables, except the ones in T
1 1 => all the tables, except the ones in T and the eHive ones
=head1 LICENSE
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