modules/Bio/EnsEMBL/Hive/AnalysisJob.pm

modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm

modules/Bio/EnsEMBL/Hive/DBSQL/SimpleRuleAdaptor.pm

modules/Bio/EnsEMBL/Hive/Extensions.pm

modules/Bio/EnsEMBL/Hive/Queen.pm

modules/Bio/EnsEMBL/Hive/RunnableDB/Dummy.pm

modules/Bio/EnsEMBL/Hive/SimpleRule.pm

modules/Bio/EnsEMBL/Hive/Worker.pm

scripts/runWorker.pl

sql/analysis-table.sql

sql/deepclean.sql

sql/find_work.sql

sql/hive-status.sql

sql/pipeline-tables.sql

sql/tables.sql