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ensembl-gh-mirror
ensembl-hive
Commits
7e2f06f6
Commit
7e2f06f6
authored
12 years ago
by
Leo Gordon
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pass complete valley-wide stats into schedule_workers without filtering
parent
63375cdb
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modules/Bio/EnsEMBL/Hive/Queen.pm
+19
-18
19 additions, 18 deletions
modules/Bio/EnsEMBL/Hive/Queen.pm
with
19 additions
and
18 deletions
modules/Bio/EnsEMBL/Hive/Queen.pm
+
19
−
18
View file @
7e2f06f6
...
...
@@ -738,16 +738,19 @@ sub count_running_workers {
=cut
sub
schedule_workers
{
my
(
$self
,
$filter_analysis
,
$orig_pending_this_meadow_by_rc_name
,
$available_submit_limit
)
=
@_
;
my
(
$self
,
$filter_analysis
,
$submit_limit
,
$available_worker_slots_by_meadow_type
,
$pending_worker_counts_by_meadow_type_rc_name
,
$analysis_id2rc_name
,
$default_meadow_type
)
=
@_
;
my
$meadow_limit
=
$available_worker_slots_by_meadow_type
->
{
$default_meadow_type
};
my
$orig_pending_this_meadow_by_rc_name
=
$pending_worker_counts_by_meadow_type_rc_name
->
{
$default_meadow_type
};
my
$available_submit_limit
=
(
$submit_limit
and
$meadow_limit
)
?
((
$submit_limit
<
$meadow_limit
)
?
$submit_limit
:
$meadow_limit
)
:
(
defined
(
$submit_limit
)
?
$submit_limit
:
$meadow_limit
);
my
@suitable_analyses
=
$filter_analysis
?
(
$filter_analysis
->
stats
)
:
@
{
$self
->
db
->
get_AnalysisStatsAdaptor
->
fetch_all_by_suitability_rc_id
()
};
my
$analysis_id2rc_id
=
$self
->
db
->
get_AnalysisAdaptor
->
fetch_HASHED_FROM_analysis_id_TO_resource_class_id
();
my
$rc_id2name
=
$self
->
db
->
get_ResourceClassAdaptor
->
fetch_HASHED_FROM_resource_class_id_TO_name
();
# combined mapping
my
%analysis_id2rc_name
=
map
{
$_
=>
$rc_id2name
->
{
$analysis_id2rc_id
->
{
$_
}}
}
keys
%$analysis_id2rc_id
;
return
{}
unless
(
@suitable_analyses
);
...
...
@@ -789,7 +792,7 @@ sub schedule_workers {
$available_load
-=
1.0
*$workers_this_analysis
/
$hive_capacity
;
}
my
$curr_rc_name
=
$analysis_id2rc_name
{
$analysis_stats
->
analysis_id
};
my
$curr_rc_name
=
$analysis_id2rc_name
->
{
$analysis_stats
->
analysis_id
};
if
(
$pending_this_meadow_by_rc_name
{
$curr_rc_name
})
{
# per-rc_name capping by pending processes, if available
my
$pending_this_analysis
=
(
$pending_this_meadow_by_rc_name
{
$curr_rc_name
}
<
$workers_this_analysis
)
?
$pending_this_meadow_by_rc_name
{
$curr_rc_name
}
:
$workers_this_analysis
;
...
...
@@ -815,20 +818,18 @@ sub schedule_workers {
sub
schedule_workers_resync_if_necessary
{
my
(
$self
,
$valley
,
$analysis
)
=
@_
;
my
$submit_limit
=
$valley
->
config_get
('
SubmitWorkersMax
');
my
$meadow
=
$valley
->
get_current_meadow
();
my
$available_worker_slots_by_meadow_type
=
$valley
->
get_available_worker_slots_by_meadow_type
();
my
$meadow_limit
=
$available_worker_slots_by_meadow_type
->
{
$meadow
->
type
};
my
$submit_limit
=
$valley
->
config_get
('
SubmitWorkersMax
');
my
$available_worker_slots_by_meadow_type
=
$valley
->
get_available_worker_slots_by_meadow_type
();
my
(
$pending_worker_counts_by_meadow_type_rc_name
,
$total_pending_all_meadows
)
=
$valley
->
get_pending_worker_counts_by_meadow_type_rc_name
();
my
$pending_this_meadow_by_rc_name
=
$pending_worker_counts_by_meadow_type_rc_name
->
{
$meadow
->
type
};
my
$available_submit_limit
=
(
$submit_limit
and
$meadow_limit
)
?
((
$submit_limit
<
$meadow_limit
)
?
$submit_limit
:
$meadow_limit
)
:
(
defined
(
$submit_limit
)
?
$submit_limit
:
$meadow_limit
);
my
$analysis_id2rc_id
=
$self
->
db
->
get_AnalysisAdaptor
->
fetch_HASHED_FROM_analysis_id_TO_resource_class_id
();
my
$rc_id2name
=
$self
->
db
->
get_ResourceClassAdaptor
->
fetch_HASHED_FROM_resource_class_id_TO_name
();
# combined mapping:
my
%analysis_id2rc_name
=
map
{
$_
=>
$rc_id2name
->
{
$analysis_id2rc_id
->
{
$_
}}
}
keys
%$analysis_id2rc_id
;
my
$default_meadow_type
=
$valley
->
get_current_meadow
()
->
type
;
my
$workers_to_run_by_rc_name
=
$self
->
schedule_workers
(
$analysis
,
$
pending_this
_meadow_
by
_rc_name
,
$available_submit_limit
);
my
$workers_to_run_by_rc_name
=
$self
->
schedule_workers
(
$analysis
,
$
submit_limit
,
$available_worker_slots_by_meadow_type
,
$pending_worker_counts_by
_meadow_
type
_rc_name
,
\
%analysis_id2rc_name
,
$default_meadow_type
);
unless
(
keys
%$workers_to_run_by_rc_name
or
$self
->
get_hive_current_load
()
or
$self
->
count_running_workers
()
)
{
print
"
\n
Scheduler: nothing is running and nothing to do (according to analysis_stats) => executing garbage collection and sync
\n
"
;
...
...
@@ -836,7 +837,7 @@ sub schedule_workers_resync_if_necessary {
$self
->
check_for_dead_workers
(
$valley
,
1
);
$self
->
synchronize_hive
(
$analysis
);
$workers_to_run_by_rc_name
=
$self
->
schedule_workers
(
$analysis
,
$
pending_this
_meadow_
by
_rc_name
,
$available_submit_limit
);
$workers_to_run_by_rc_name
=
$self
->
schedule_workers
(
$analysis
,
$
submit_limit
,
$available_worker_slots_by_meadow_type
,
$pending_worker_counts_by
_meadow_
type
_rc_name
,
\
%analysis_id2rc_name
,
$default_meadow_type
);
}
return
$workers_to_run_by_rc_name
;
...
...
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