pulled in bugfix [to ENSCOMPARASW-166] : standaloneJob prints the error...

pulled in bugfix [to ENSCOMPARASW-166] : standaloneJob prints the error message and exits with error code=1

modules/Bio/EnsEMBL/Hive/Process.pm

@@ -222,7 +222,7 @@ sub warning {
     $is_error //= 0;
     chomp $msg;
 
-    $self->say_with_header( ($is_error ? 'Fatal' : 'Warning')." : $msg" );
+    $self->say_with_header( ($is_error ? 'Fatal' : 'Warning')." : $msg", 1 );
 
     my $job = $self->input_job;
 

scripts/standaloneJob.pl

@@ -87,6 +87,8 @@ foreach my $branch_code (keys %$flow_into) {
 $runnable_object->input_job($job);
 $runnable_object->life_cycle();
 
+exit(1) if($job->died_somewhere());
+
 $runnable_object->cleanup_worker_temp_directory() unless($no_cleanup);
 
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