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ensembl-gh-mirror
ensembl-hive
Commits
b250f832
Commit
b250f832
authored
Apr 14, 2011
by
Leo Gordon
Browse files
let us universally use ENSEMBL_CVS_ROOT_DIR variable to point at the location
parent
5a11fa00
Changes
6
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6 changed files
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6 additions
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6 deletions
+6
-6
modules/Bio/EnsEMBL/Hive/PipeConfig/ApplyToDatabases_conf.pm
modules/Bio/EnsEMBL/Hive/PipeConfig/ApplyToDatabases_conf.pm
+1
-1
modules/Bio/EnsEMBL/Hive/PipeConfig/FailureTest_conf.pm
modules/Bio/EnsEMBL/Hive/PipeConfig/FailureTest_conf.pm
+1
-1
modules/Bio/EnsEMBL/Hive/PipeConfig/FileZipperUnzipper_conf.pm
...es/Bio/EnsEMBL/Hive/PipeConfig/FileZipperUnzipper_conf.pm
+1
-1
modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm
modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm
+1
-1
modules/Bio/EnsEMBL/Hive/PipeConfig/SemaLongMult_conf.pm
modules/Bio/EnsEMBL/Hive/PipeConfig/SemaLongMult_conf.pm
+1
-1
modules/Bio/EnsEMBL/Hive/PipeConfig/TableDumperZipper_conf.pm
...les/Bio/EnsEMBL/Hive/PipeConfig/TableDumperZipper_conf.pm
+1
-1
No files found.
modules/Bio/EnsEMBL/Hive/PipeConfig/ApplyToDatabases_conf.pm
View file @
b250f832
...
...
@@ -36,7 +36,7 @@ use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf'); # All Hive datab
sub
default_options
{
my
(
$self
)
=
@_
;
return
{
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
HOME
'}
.
'
/work
',
# some Compara developers might prefer $ENV{'HOME'}.'/ensembl_main'
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
ENSEMBL_CVS_ROOT_DIR
'},
# it will make sense to set this variable if you are going to use ehive frequently
'
pipeline_name
'
=>
'
apply_to_databases
',
# name used by the beekeeper to prefix job names on the farm
...
...
modules/Bio/EnsEMBL/Hive/PipeConfig/FailureTest_conf.pm
View file @
b250f832
...
...
@@ -51,7 +51,7 @@ use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf'); # All Hive datab
sub
default_options
{
my
(
$self
)
=
@_
;
return
{
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
HOME
'}
.
'
/work
',
# some Compara developers might prefer $ENV{'HOME'}.'/ensembl_main'
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
ENSEMBL_CVS_ROOT_DIR
'},
# it will make sense to set this variable if you are going to use ehive frequently
'
pipeline_name
'
=>
'
failure_test
',
# name used by the beekeeper to prefix job names on the farm
...
...
modules/Bio/EnsEMBL/Hive/PipeConfig/FileZipperUnzipper_conf.pm
View file @
b250f832
...
...
@@ -51,7 +51,7 @@ use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf'); # All Hive datab
sub
default_options
{
my
(
$self
)
=
@_
;
return
{
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
HOME
'}
.
'
/work
',
# some Compara developers might prefer $ENV{'HOME'}.'/ensembl_main'
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
ENSEMBL_CVS_ROOT_DIR
'},
# it will make sense to set this variable if you are going to use ehive frequently
'
pipeline_name
'
=>
'
zip_unzip_files
',
# name used by the beekeeper to prefix job names on the farm
...
...
modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm
View file @
b250f832
...
...
@@ -64,7 +64,7 @@ use Bio::EnsEMBL::Hive::Extensions;
sub
default_options
{
my
(
$self
)
=
@_
;
return
{
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
HOME
'}
.
'
/work
',
# some Compara developers might prefer $ENV{'HOME'}.'/ensembl_main'
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
ENSEMBL_CVS_ROOT_DIR
'},
# it will make sense to set this variable if you are going to use ehive frequently
'
pipeline_name
'
=>
'
hive_generic
',
...
...
modules/Bio/EnsEMBL/Hive/PipeConfig/SemaLongMult_conf.pm
View file @
b250f832
...
...
@@ -44,7 +44,7 @@ use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf'); # All Hive datab
sub
default_options
{
my
(
$self
)
=
@_
;
return
{
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
HOME
'}
.
'
/work
',
# some Compara developers might prefer $ENV{'HOME'}.'/ensembl_main'
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
ENSEMBL_CVS_ROOT_DIR
'},
# it will make sense to set this variable if you are going to use ehive frequently
'
pipeline_name
'
=>
'
sema_long_mult
',
# name used by the beekeeper to prefix job names on the farm
...
...
modules/Bio/EnsEMBL/Hive/PipeConfig/TableDumperZipper_conf.pm
View file @
b250f832
...
...
@@ -53,7 +53,7 @@ use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf'); # All Hive datab
sub
default_options
{
my
(
$self
)
=
@_
;
return
{
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
HOME
'}
.
'
/work
',
# some Compara developers might prefer $ENV{'HOME'}.'/ensembl_main'
'
ensembl_cvs_root_dir
'
=>
$ENV
{'
ENSEMBL_CVS_ROOT_DIR
'},
# it will make sense to set this variable if you are going to use ehive frequently
'
pipeline_name
'
=>
'
zip_tables
',
# name used by the beekeeper to prefix job names on the farm
...
...
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