removed references to Bio::EnsEMBL::Root and it's inherited methods
created new() methods where needed, replaced throw, rearrange as needed
Showing
- modules/Bio/EnsEMBL/Hive/AnalysisCtrlRule.pm 7 additions, 9 deletionsmodules/Bio/EnsEMBL/Hive/AnalysisCtrlRule.pm
- modules/Bio/EnsEMBL/Hive/AnalysisJob.pm 5 additions, 5 deletionsmodules/Bio/EnsEMBL/Hive/AnalysisJob.pm
- modules/Bio/EnsEMBL/Hive/AnalysisStats.pm 5 additions, 5 deletionsmodules/Bio/EnsEMBL/Hive/AnalysisStats.pm
- modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm 4 additions, 2 deletionsmodules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
- modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm 5 additions, 5 deletionsmodules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
- modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm 3 additions, 1 deletionmodules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm
- modules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm 6 additions, 4 deletionsmodules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm
- modules/Bio/EnsEMBL/Hive/DBSQL/SimpleRuleAdaptor.pm 13 additions, 13 deletionsmodules/Bio/EnsEMBL/Hive/DBSQL/SimpleRuleAdaptor.pm
- modules/Bio/EnsEMBL/Hive/DataflowRule.pm 7 additions, 8 deletionsmodules/Bio/EnsEMBL/Hive/DataflowRule.pm
- modules/Bio/EnsEMBL/Hive/Queen.pm 4 additions, 4 deletionsmodules/Bio/EnsEMBL/Hive/Queen.pm
- modules/Bio/EnsEMBL/Hive/SimpleRule.pm 6 additions, 7 deletionsmodules/Bio/EnsEMBL/Hive/SimpleRule.pm
- modules/Bio/EnsEMBL/Hive/URLFactory.pm 4 additions, 3 deletionsmodules/Bio/EnsEMBL/Hive/URLFactory.pm
- modules/Bio/EnsEMBL/Hive/Worker.pm 8 additions, 6 deletionsmodules/Bio/EnsEMBL/Hive/Worker.pm
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