Commit cd061795 authored by Leo Gordon's avatar Leo Gordon
Browse files

added "use strict;" and "use warnings;" to all files that were missing these lines

parent 4e7bf429
......@@ -32,6 +32,7 @@
package Bio::EnsEMBL::Hive::Accumulator;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('stringify');
......
......@@ -36,6 +36,7 @@
package Bio::EnsEMBL::Hive::Analysis;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('stringify');
use Bio::EnsEMBL::Hive::AnalysisCtrlRule;
......
......@@ -42,6 +42,7 @@
package Bio::EnsEMBL::Hive::AnalysisCtrlRule;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('throw');
use Bio::EnsEMBL::Hive::URLFactory;
......
......@@ -37,6 +37,7 @@
package Bio::EnsEMBL::Hive::AnalysisJob;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('stringify', 'destringify');
use Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor;
......
......@@ -36,6 +36,7 @@
package Bio::EnsEMBL::Hive::AnalysisStats;
use strict;
use warnings;
use List::Util 'sum';
use POSIX;
......
package Bio::EnsEMBL::Hive::Cacheable;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('stringify');
use Bio::EnsEMBL::Hive::Utils::Collection;
our $cache_by_class; # global Hash-of-Hashes
our %cache_by_class; # global Hash-of-Hashes
sub collection {
......
......@@ -35,6 +35,7 @@
package Bio::EnsEMBL::Hive::DBSQL::AccumulatorAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('destringify');
......
......@@ -38,6 +38,7 @@
package Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Analysis;
use Bio::EnsEMBL::Hive::URLFactory;
......
......@@ -37,6 +37,7 @@
package Bio::EnsEMBL::Hive::DBSQL::AnalysisCtrlRuleAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::AnalysisCtrlRule;
use base ('Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor');
......
......@@ -41,6 +41,7 @@
package Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor;
use strict;
use warnings;
use base ('Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor');
......
......@@ -42,6 +42,7 @@
package Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor;
use Bio::EnsEMBL::Hive::AnalysisJob;
......
......@@ -42,6 +42,7 @@
package Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::AnalysisStats;
......
......@@ -68,6 +68,7 @@ the Bio::EnsEMBL::Registry and will not be instantiated directly.
package Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection;
use strict;
use warnings;
use DBI;
use Bio::EnsEMBL::Hive::DBSQL::StatementHandle;
......
......@@ -35,6 +35,7 @@
package Bio::EnsEMBL::Hive::DBSQL::DBAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive;
use Bio::EnsEMBL::Hive::DBSQL::DBConnection;
......
......@@ -37,6 +37,7 @@
package Bio::EnsEMBL::Hive::DBSQL::DataflowRuleAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('stringify');
use Bio::EnsEMBL::Hive::DataflowRule;
......
......@@ -37,6 +37,7 @@
package Bio::EnsEMBL::Hive::DBSQL::LogMessageAdaptor;
use strict;
use warnings;
use base ('Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor');
......
......@@ -35,6 +35,7 @@
package Bio::EnsEMBL::Hive::DBSQL::MetaAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::MetaParameters;
use base ('Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor');
......
......@@ -37,6 +37,7 @@
package Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::NakedTable;
use base ('Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor');
......
......@@ -37,6 +37,7 @@
package Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor;
use strict;
use warnings;
use base ('Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor');
......
......@@ -35,6 +35,7 @@
package Bio::EnsEMBL::Hive::DBSQL::PipelineWideParametersAdaptor;
use strict;
use warnings;
use Bio::EnsEMBL::Hive::Utils ('stringify', 'destringify');
use base ('Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor');
......
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