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ensembl-gh-mirror
ensembl-hive
Commits
cd061795
Commit
cd061795
authored
May 23, 2014
by
Leo Gordon
Browse files
added "use strict;" and "use warnings;" to all files that were missing these lines
parent
4e7bf429
Changes
48
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20 changed files
with
23 additions
and
1 deletion
+23
-1
modules/Bio/EnsEMBL/Hive/Accumulator.pm
modules/Bio/EnsEMBL/Hive/Accumulator.pm
+1
-0
modules/Bio/EnsEMBL/Hive/Analysis.pm
modules/Bio/EnsEMBL/Hive/Analysis.pm
+1
-0
modules/Bio/EnsEMBL/Hive/AnalysisCtrlRule.pm
modules/Bio/EnsEMBL/Hive/AnalysisCtrlRule.pm
+1
-0
modules/Bio/EnsEMBL/Hive/AnalysisJob.pm
modules/Bio/EnsEMBL/Hive/AnalysisJob.pm
+1
-0
modules/Bio/EnsEMBL/Hive/AnalysisStats.pm
modules/Bio/EnsEMBL/Hive/AnalysisStats.pm
+1
-0
modules/Bio/EnsEMBL/Hive/Cacheable.pm
modules/Bio/EnsEMBL/Hive/Cacheable.pm
+4
-1
modules/Bio/EnsEMBL/Hive/DBSQL/AccumulatorAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AccumulatorAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/CoreDBConnection.pm
modules/Bio/EnsEMBL/Hive/DBSQL/CoreDBConnection.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/LogMessageAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/LogMessageAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/MetaAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/MetaAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/NakedTableAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/NakedTableAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/ObjectAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/ObjectAdaptor.pm
+1
-0
modules/Bio/EnsEMBL/Hive/DBSQL/PipelineWideParametersAdaptor.pm
...s/Bio/EnsEMBL/Hive/DBSQL/PipelineWideParametersAdaptor.pm
+1
-0
No files found.
modules/Bio/EnsEMBL/Hive/Accumulator.pm
View file @
cd061795
...
...
@@ -32,6 +32,7 @@
package
Bio::EnsEMBL::Hive::
Accumulator
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
stringify
');
...
...
modules/Bio/EnsEMBL/Hive/Analysis.pm
View file @
cd061795
...
...
@@ -36,6 +36,7 @@
package
Bio::EnsEMBL::Hive::
Analysis
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
stringify
');
use
Bio::EnsEMBL::Hive::
AnalysisCtrlRule
;
...
...
modules/Bio/EnsEMBL/Hive/AnalysisCtrlRule.pm
View file @
cd061795
...
...
@@ -42,6 +42,7 @@
package
Bio::EnsEMBL::Hive::
AnalysisCtrlRule
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
throw
');
use
Bio::EnsEMBL::Hive::
URLFactory
;
...
...
modules/Bio/EnsEMBL/Hive/AnalysisJob.pm
View file @
cd061795
...
...
@@ -37,6 +37,7 @@
package
Bio::EnsEMBL::Hive::
AnalysisJob
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
stringify
',
'
destringify
');
use
Bio::EnsEMBL::Hive::DBSQL::
AnalysisJobAdaptor
;
...
...
modules/Bio/EnsEMBL/Hive/AnalysisStats.pm
View file @
cd061795
...
...
@@ -36,6 +36,7 @@
package
Bio::EnsEMBL::Hive::
AnalysisStats
;
use
strict
;
use
warnings
;
use
List::
Util
'
sum
';
use
POSIX
;
...
...
modules/Bio/EnsEMBL/Hive/Cacheable.pm
View file @
cd061795
package
Bio::EnsEMBL::Hive::
Cacheable
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
stringify
');
use
Bio::EnsEMBL::Hive::Utils::
Collection
;
our
$
cache_by_class
;
# global Hash-of-Hashes
our
%
cache_by_class
;
# global Hash-of-Hashes
sub
collection
{
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AccumulatorAdaptor.pm
View file @
cd061795
...
...
@@ -35,6 +35,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AccumulatorAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
destringify
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisAdaptor.pm
View file @
cd061795
...
...
@@ -38,6 +38,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AnalysisAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Analysis
;
use
Bio::EnsEMBL::Hive::
URLFactory
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
View file @
cd061795
...
...
@@ -37,6 +37,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AnalysisCtrlRuleAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
AnalysisCtrlRule
;
use
base
('
Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm
View file @
cd061795
...
...
@@ -41,6 +41,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AnalysisDataAdaptor
;
use
strict
;
use
warnings
;
use
base
('
Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
View file @
cd061795
...
...
@@ -42,6 +42,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AnalysisJobAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::DBSQL::
AnalysisDataAdaptor
;
use
Bio::EnsEMBL::Hive::
AnalysisJob
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm
View file @
cd061795
...
...
@@ -42,6 +42,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AnalysisStatsAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
AnalysisStats
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/CoreDBConnection.pm
View file @
cd061795
...
...
@@ -68,6 +68,7 @@ the Bio::EnsEMBL::Registry and will not be instantiated directly.
package
Bio::EnsEMBL::Hive::DBSQL::
CoreDBConnection
;
use
strict
;
use
warnings
;
use
DBI
;
use
Bio::EnsEMBL::Hive::DBSQL::
StatementHandle
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
View file @
cd061795
...
...
@@ -35,6 +35,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
DBAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::
Hive
;
use
Bio::EnsEMBL::Hive::DBSQL::
DBConnection
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm
View file @
cd061795
...
...
@@ -37,6 +37,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
DataflowRuleAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
stringify
');
use
Bio::EnsEMBL::Hive::
DataflowRule
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/LogMessageAdaptor.pm
View file @
cd061795
...
...
@@ -37,6 +37,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
LogMessageAdaptor
;
use
strict
;
use
warnings
;
use
base
('
Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/MetaAdaptor.pm
View file @
cd061795
...
...
@@ -35,6 +35,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
MetaAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
MetaParameters
;
use
base
('
Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/NakedTableAdaptor.pm
View file @
cd061795
...
...
@@ -37,6 +37,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
NakedTableAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
NakedTable
;
use
base
('
Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/ObjectAdaptor.pm
View file @
cd061795
...
...
@@ -37,6 +37,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
ObjectAdaptor
;
use
strict
;
use
warnings
;
use
base
('
Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
');
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/PipelineWideParametersAdaptor.pm
View file @
cd061795
...
...
@@ -35,6 +35,7 @@
package
Bio::EnsEMBL::Hive::DBSQL::
PipelineWideParametersAdaptor
;
use
strict
;
use
warnings
;
use
Bio::EnsEMBL::Hive::
Utils
('
stringify
',
'
destringify
');
use
base
('
Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor
');
...
...
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