this surboutine has moved into the script

docs/long_mult_pipeline.conf

@@ -18,14 +18,6 @@ my $pipeline_db = {
     -dbname => $ENV{USER}.'_long_mult_pipeline',
 };
 
-sub dbconn_2_mysql {
-    my ($db_conn, $with_db) = @_;
-
-    return "--host=$db_conn->{-host} --port=$db_conn->{-port} "
-          ."--user=$db_conn->{-user} --pass=$db_conn->{-pass} "
-          .($with_db ? $db_conn->{-dbname} : '');
-} 
-
 return {
         # pass connection parameters into the pipeline initialization script to create adaptors:
     -pipeline_db => $pipeline_db,

docs/long_mult_sema_pipeline.conf

@@ -18,14 +18,6 @@ my $pipeline_db = {
     -dbname => $ENV{USER}.'_long_mult_sema_pipeline',
 };
 
-sub dbconn_2_mysql {
-    my ($db_conn, $with_db) = @_;
-
-    return "--host=$db_conn->{-host} --port=$db_conn->{-port} "
-          ."--user=$db_conn->{-user} --pass=$db_conn->{-pass} "
-          .($with_db ? $db_conn->{-dbname} : '');
-} 
-
 return {
         # pass connection parameters into the pipeline initialization script to create adaptors:
     -pipeline_db => $pipeline_db,