Registry support is now cenralised in DBAdaptor, so scripts just pass reg_*...
Registry support is now cenralised in DBAdaptor, so scripts just pass reg_* options into the constructor. Passing -reg_type allows to connect to originally non-Hive Registry entries.
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- modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm 23 additions, 4 deletionsmodules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
- scripts/beekeeper.pl 16 additions, 18 deletionsscripts/beekeeper.pl
- scripts/generate_graph.pl 26 additions, 29 deletionsscripts/generate_graph.pl
- scripts/hoover_pipeline.pl 14 additions, 9 deletionsscripts/hoover_pipeline.pl
- scripts/lsf_report.pl 25 additions, 11 deletionsscripts/lsf_report.pl
- scripts/runWorker.pl 21 additions, 12 deletionsscripts/runWorker.pl
- scripts/seed_pipeline.pl 16 additions, 11 deletionsscripts/seed_pipeline.pl
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