This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- Apr 23, 2013
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Leo Gordon authored
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Leo Gordon authored
bugfix: check before storing rc (may be necessary in -analysis_topup mode) and warn about consequences of redefining it.
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Leo Gordon authored
API extension: store() now also returns how many actual store operations (as opposed to fetching of already stored ones) it has performed
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- Apr 12, 2013
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Leo Gordon authored
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- Apr 08, 2013
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Miguel Pignatelli [prf1] authored
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- Mar 27, 2013
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Javier Herrero authored
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- Mar 26, 2013
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Leo Gordon authored
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- Mar 25, 2013
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Leo Gordon authored
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- Mar 22, 2013
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Leo Gordon authored
Back to num_required_workers' meaning "how many extra workers we need to add to this analysis"; fixing a scheduling bug/oversensitivity to manual change of batch_size
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Leo Gordon authored
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- Mar 20, 2013
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Leo Gordon authored
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Leo Gordon authored
free 'Start' from dealing with 'a_multiplier' by using an input_id_template in PipeConfig instead; renamed 'Start' to 'DigitFactory' to reflect that
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Leo Gordon authored
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- Mar 14, 2013
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Leo Gordon authored
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- Mar 12, 2013
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Leo Gordon authored
A 3-analysis pipeline with almost exclusive use of #substitution#; mysql_conn() and mysql_dbname() modified to transform urls as well
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
A cleaner example of a two-analysis pipelines with better demonstration of #substitution# and only implicit $self->o() references
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Leo Gordon authored
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emepyc authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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- Mar 08, 2013
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Matthieu Muffato authored
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- Mar 05, 2013
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Leo Gordon authored
Protect generate_graph.pl in table-drawing mode from printing too many rows (by setting a limit in JSON config)
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Leo Gordon authored
Protect generate_graph.pl in job-drawing mode from printing too many jobs (by setting a limit in JSON config)
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Leo Gordon authored
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- Mar 01, 2013
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Matthieu Muffato authored
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- Feb 28, 2013
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Leo Gordon authored
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Leo Gordon authored
cosmetic: added new commits to README and renamed it Changelog; split out the old README.txt (non-Changelog part)
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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- Feb 27, 2013
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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- Feb 25, 2013
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Matthieu Muffato authored
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- Feb 23, 2013
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Leo Gordon authored
JobFactory uses $overriding_hash to create jobs/rows from input_id_template; 'input_id' parameter deprecated; standaloneJob supports templates.
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Leo Gordon authored
Substitution machinery now supports an extra $overriding_hash that contains parameters with higher precedence than the whole of param() structure
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- Feb 22, 2013
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Leo Gordon authored
fixed several problems with parameter substitution and detection of undefs; added param_required() and param_is_defined()
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Leo Gordon authored
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