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  1. 15 Nov, 2005 1 commit
  2. 07 Nov, 2005 1 commit
  3. 04 Nov, 2005 2 commits
  4. 02 Nov, 2005 1 commit
  5. 25 Oct, 2005 1 commit
  6. 14 Oct, 2005 3 commits
  7. 13 Oct, 2005 1 commit
  8. 01 Oct, 2005 6 commits
  9. 26 Sep, 2005 1 commit
  10. 22 Sep, 2005 1 commit
  11. 14 Sep, 2005 2 commits
  12. 18 Aug, 2005 1 commit
  13. 16 Aug, 2005 1 commit
    • Jessica Severin's avatar
      added system for job-level blocking/unblocking. This is a very fine grain · faead1e0
      Jessica Severin authored
      control structure where a process/program has been made aware of the job(s)
      they are responsible for controlling.  This is facilited via a job url:
         mysql://ia64e:3306/jessica_compara32b_tree/analysis_job?dbID=6065355
      AnalysisJobAdptor::CreateNewJob now returns this url on job creation.
      When a job is datflowed, an array of these urls is returned (one for each rule).
      Jobs can now be dataflowed from a Process subclass with blocking enabled.
      A job can be fetched directly with one of these URLs.
      A commandline utility ehive_unblock.pl has been added to unblock a url job.
      To unblock a job do:
         Bio::EnsEMBL::Hive::URLFactory->fetch($url)->update_status('READY');
      This is primarily useful in asynchronous split process/parsing situations.
      faead1e0
  14. 15 Aug, 2005 2 commits
  15. 11 Aug, 2005 1 commit
  16. 09 Aug, 2005 5 commits
  17. 13 Jun, 2005 5 commits
  18. 26 May, 2005 1 commit
  19. 18 Apr, 2005 1 commit
    • Jessica Severin's avatar
      made more Registry friendly by setting -species to be the $dbname · d9eaabe4
      Jessica Severin authored
      thus allowing one to do hybrid URL/Registry code like...
        if($url) {
          $dbc = Bio::EnsEMBL::Hive::URLFactory->fetch($url, 'compara')->dbc;
          $dbname = $dbc->dbname();
        }
        else { $dbc = Bio::EnsEMBL::Registry->get_DBAdaptor($dbname,'compara')->dbc; }
        $fa = Bio::EnsEMBL::Registry->get_adaptor($dbname,'compara','Family');
      d9eaabe4
  20. 22 Mar, 2005 1 commit
  21. 11 Mar, 2005 2 commits