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Created with Raphaël 2.2.05Jul42130Jun2916151473231May2827262524232120191612111095319Apr1814131130Mar292624231817161210921Feb27Jan2120191412111065431Dec282321141326Nov26Oct22191884130Sep2826232221201614131110987432131Aug242320131211109516Jul141312230Jun2928252318171615141310326May20181714131211107654330Apr28272630Mar2624232219108427Feb2625231918171615426Jan2522161111Dec843230Nov271918216Oct1329Sep24232111Aug320Jul1327May13827Apr313Mar15Feb1215Jan9Dec30Oct2922Sep14Aug11Jul28May18Apr12Mar14Dec16Nov22May7Mar1Feb16Nov12Oct29Sep412Jun85May22Mar171514627Feb315Dec22Nov1574225Oct1413126Sep221418Aug161511913Jun26May18Apr22Mar11843223Feb22211716141098742128Jan191813121187614Dec1310930Nov25242220191817161095427Oct2019181512865430Sep27232231Aug2714111097643229Jul2721161514added a compara_db exampleformattingallow dataflow from standaloneJobfixed a bug that prevented parsing of lists; also allow destringification of values from cmdlinemake sure we support PASSED_ON status for jobs that undergo GarbageCollectionbe numerically strict with the value stored in boolean fieldrationalized dynamic batch_size estimation: it is now done centrally both for single Workers (claiming) and the Queen (sync procedure)show count to be 0 for analyses which have no jobsOld implementation of store_out_files() was generating incompatible SQL for SQLite. Prepared statement version developed & have removed the IGNORE component due to the delete which occurs as the first task in the method.rationalized reg_conf/reg_alias names and fixed the way they are passed into runWorker and used in itPOD fixes for Doxygen compatibilitysqlite has views but not proceduresnot enough attempts, obviouslyHive::RunnableDB::JobFactory interface change. You may need to review your PipeConfig modulesbugfix: do not force whole-piece substitutions into string contextmake dir_revhash available to param substitutiononly finish if sth was definedshow all analyses, including empty onescheck for multiple analysis sections with the same name:)allow jobs' dataflow rules to be overriddendbh(): centrally managed db_handle for universal building blocksjust spacingnew script for running standalone jobssome common subroutines moving outnot really neededjobs created by scriptBranch names proved to be too confusing. The functionality stays, but is removed from the example to follow.correct parsing in cases where there is only one job in a job arrayseparate parsing of optionstrying to fix the monitorfixed a bug that prevented the Hive from claiming non-virgin jobsgone long agotoo cautious :)bit less verboseshow analysis_id and done jobs on the graphattempt to store all columns, including the autoincrementtypo removedallow autoincrement fields to be specifieda better (but still hacky) way of setting hive_driver