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Created with Raphaël 2.2.014May131211107654330Apr28272630Mar2624232219108427Feb2625231918171615426Jan2522161111Dec843230Nov271918216Oct1329Sep24232111Aug320Jul1327May13827Apr313Mar15Feb1215Jan9Dec30Oct2922Sep14Aug11Jul28May18Apr12Mar14Dec16Nov22May7Mar1Feb16Nov12Oct29Sep412Jun85May22Mar171514627Feb315Dec22Nov1574225Oct1413126Sep221418Aug161511913Jun26May18Apr22Mar11843223Feb22211716141098742128Jan191813121187614Dec1310930Nov25242220191817161095427Oct2019181512865430Sep27232231Aug2714111097643229Jul27211615141398621Jun19171615141198742127May25new style LongMult pipeline config and running addedpod formatting mainlyshow mysql command lineanalysis_topup and job_topup modes supportedformattingpod documentation formattingproper loading of modules by their filename and proper docslatest changeslg4_post_rel58_…lg4_post_rel58_20100511added support for input_id_template in dataflow_ruleanother documentation dayrecursive param_substitute now takes care of substituting _range_start/_range_end/_range_count in JobFactory; change of syntaxanother example: potential for a double fan using JobFactorynow with param_substitute in all four sourcestypothis value is never useddoes not seem to need itperldocs addeddoes not seem to need itre-written to support ProcessWithParams and with perldoc addeddocumentation day!pod documentation addedbetter namesstart documenting things in podthis method is dataflow-able now, to make it possible to extend the pipelinesimple building_block-only pipeline solutionsinputcmd mode addedadding parameters to make it ncRNA-pipeline readybug fixJobFactory is now able to run queries against external databasesmore parameters and commentsscreen messagesthis is old now, pretty old :)allow to initialize sub-components that have never been seen directly (examples in Families pipeline)cosmeticREADME points at the new config modulescosmetic changessemaphored example as welluse inheritancetemporarily retained for compatibilitysupport for parametric pipeline configuration