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Created with Raphaël 2.2.01Mar24Feb23201615141031Jan208Dec29Nov2825242322211710415Oct23Sep2095125Aug181526Jul201514131286542130Jun2916151473231May2827262524232120191612111095319Apr1814131130Mar292624231817161210921Feb27Jan2120191412111065431Dec282321141326Nov26Oct22191884130Sep2826232221201614131110987432131Aug242320131211109516Jul141312230Jun2928252318171615141310326May20181714131211107654330Apr28272630Mar2624232219108427Feb2625231918171615426Jan2522161111Dec843230Nov271918216Oct1329Sep24232111Aug320Jul1327May13827Apr313Mar15Feb1215Jan9Dec30Oct2922Sep14Aug11Jul28May18Apr12Mar14Dec16Nov22May7Mar1Feb16Nov12Oct29Sep412Jun85May22Mar171514627Feb315Dec22Nov1574225Oct1413126Sep221418Aug161511913Jun26May18Apr22Mar11843223Feb22211716141098742128Jan191813121187614Dec1310930Nov2524222019181716109a special module to deal with stacks of filehandle redirectionpass debug level parameter from beekeeper.pl to runWorker.plbugfix: only store values that have been set - avoid overriding defaultsattempt to display each funnel below its fandiagram tool no longer generates unnecessarily broken edgesrestrict to DEAD workers onlydocumentation and better user interface (dumping and undumping supported)turned mem and swap into numeric columns; careful with units!post-mortem loader of worker memory usage information from the LSFPipeline parameters cannot take undefined values. Warn and force into 0added changelog for rel.66lg4_post_rel_66…lg4_post_rel_66_20120210an optimization: do not touch analysis_stats when job.status or job.analysis is not changingchanges for rel.66checked in by mistake last time; took back the changes nowRemoved maximise_concurrency and added analysis_stats.priority to guide the scheduler; improved scheduler and LSF meadowAn extension to the dataflow-rule-driven semaphores ('2->A', '3->A' and 'A->1' notation)removed 'sema_fan_branch_code' parameter since you can now set up a semaphored group via PipeConfig' languageno need to check for semaphores when state is already DONE or PASSED_ONmaking sure semaphores are correctly propagated through gc_dataflow and PASSED_ON stateallow more than one input_id_template per analysisbugfix: funnel_branch is no longer initialized to 1 when undefbugfix: correct counting of total_job_number in non-trigger modebugfix - branch_name_2_code should return 1 on undefshow the dataflow-generated semaphores on the diagrambugfix: object adaptor now correctly reconstructs dbIDmerge the two ways of running the LongMult pipeline into oneintegrated semaphored fans/funnels into dataflow rulesthis value was returned but never usedremove the per-worker batch_size methodremove the per-worker batch_size flag from scriptsmake num_running_workers updatable by triggers + better updates during worker check-inthese four methods were neither used by Hive nor by Compara codeDBI with versions older than 1.6 are not supportedrelease 65An example pipeline that turns lines of a file into jobs and runs them on the farmextend for other schema typesanalysis_data may be overcrowded with inserts during dataflow with input_id longer than 255 characterscouple of typoscheckout seems to work better than exportIncorporate ENV hash into the tree of possible options in order to be able to "require" a value. And a bit of config inheritance cleanup.