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Created with Raphaël 2.2.022Feb21201918151413127625Jan15141110417Dec1265130Nov2928272321201918161513129862131Oct24231917161513121110985432128Sep2726252120754329Aug282725242317161432131Jul25242316329Jun27262522191513111086131May30282322211817121110982123Apr1627Mar2620197124Feb23201615141031Jan208Dec29Nov2825242322211710415Oct23Sep2095125Aug181526Jul201514131286542130Jun2916151473231May2827262524232120191612111095319Apr1814131130Mar292624231817161210921Feb27Jan2120191412111065431Dec282321141326Nov26Oct22191884130Sep2826232221201614131110987432131Aug242320131211109516Jul141312230Jun2928252318171615141310326May20181714131211107654330Apr28272630Mar26242322fixed several problems with parameter substitution and detection of undefs; added param_required() and param_is_defined()reload the cached data_dbc() value on change of param('db_conn')The modules of the analyses must be accessibleNew runnable to check the size of the resultset of any SQL queryremoved param_substitute() call from Runnables -- no longer needed, as substitution is automatica "total" (anything-to-anything) substitution mechanism has been implemented in Hive::ParamsThe preferred meadow type must be registeredThe modules of the analysis must be loadableIn dataflow rules within the same database, the destination analysis must existIn control rules within the same database, the condition analysis must existmake sure all LSF pids are quoted, to protect them from tcsh interpretation of square bracketsa new script to remove old "DONE" jobs and associated job_file and log_message entriesseed_pipeline.pl now shows examples of input_ids of seedable analysesMade $final_clause a parameter of _generic_fetch() & removed default ORDER-BY; hopefully fasterIn case no -logic_name/-analysis_id was supplied, show the list of analyses that have no incoming dataflow (and so are candidates for seeding)Added perldoc to seed_pipeline.pl scriptA new script to quickly seed any analysis of any pipeline.hide the calls to URLFactory into the DBAdaptor's constructorhash of resources no longer depends on default_meadow (bugfix)Updated to release 71Tables must be in the right order. Otherwise, the foreign key checks complainresolving conflict: using minediagram improvement: (1) no more "empty boxes" and (2) tables dataflown from a box are shown in their boxesTable dataflows are now included into semaphore boxes (bugfix: wrong internal name)Added a new presentation, moved presentations into a separate folder.cosmetic fix: commented back the debug output that was left uncommented by mistakeAdded coloured barchart display option and jobs/data display option (no big data checks, use with care on small examples).injected a padding around the pipeline diagramsend the fatal "COULDNT CREATE WORKER" message to stderr instead of stdoutadded command line options -submit_stdout_file and -submit_stderr_file to peek into submission output/error streamsusing PERLs File::Path::make_path instead of mkdir-p to create hive_log_diradded a LongMult pipeline diagram in completed state (for easier reference)fixed a bug in computing num_required_workers according to the new rules (thanks Matthieu for reporting)bugfix: correctly checking analysis_capacity (thanks Andy for reporting)bugfix: do not proceed with negative numbers of workers for submission (thanks to Matthieu for reporting)bugfix: -job_limit now works correctly also with respecializing workersfix: 'msg' view now displays the analysis of the job (which is fixed), not that of worker (which may change with time)experimental feature: re-specialization of workers instead of dying from NO_WORKswitched to using Limiter class for job_limit and made some related structural changeschanged the meaning of 'num_required_workers' to "total estimated number of workers needed for this analysis" ( 'num_running_workers' is now included in it )