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Commit 27795298 authored by Marek Szuba's avatar Marek Szuba
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.gitlab-ci.yml: add $HTSLIB_DIR to ld.so.conf

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...@@ -31,6 +31,8 @@ ...@@ -31,6 +31,8 @@
- git clone --branch=master --depth=1 https://github.com/Ensembl/ensembl-variation.git - git clone --branch=master --depth=1 https://github.com/Ensembl/ensembl-variation.git
- export HTSLIB_DIR="${DEPS}/htslib" - export HTSLIB_DIR="${DEPS}/htslib"
- export KENT_SRC="${DEPS}/kent-335_base/src" - export KENT_SRC="${DEPS}/kent-335_base/src"
- echo "${HTSLIB_DIR}" >> /etc/ld.so.conf.d/99gitlabci
- ldconfig
- mkdir -p "${DEPS}" - mkdir -p "${DEPS}"
- cd "${DEPS}" - cd "${DEPS}"
- ${CI_PROJECT_DIR}/travisci/get_dependencies.sh - ${CI_PROJECT_DIR}/travisci/get_dependencies.sh
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