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Commit 4256c4dd authored by Marek Szuba's avatar Marek Szuba
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.gitlab-ci.yml: set more environment variables + build C dependencies

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...@@ -14,7 +14,10 @@ ...@@ -14,7 +14,10 @@
MYSQL_USER: "travis" MYSQL_USER: "travis"
MYSQL_PASSWORD: "" MYSQL_PASSWORD: ""
USER: "gitlabci" USER: "gitlabci"
CFLAGS: "-fPIC"
DEPS: "${CI_PROJECT_DIR}/dependencies" DEPS: "${CI_PROJECT_DIR}/dependencies"
HTSLIB_DIR: "${DEPS}/htslib"
KENT_SRC: "${DEPS}/kent-335_base/src"
cache: cache:
paths: paths:
...@@ -31,7 +34,9 @@ ...@@ -31,7 +34,9 @@
- mkdir -p "${DEPS}" - mkdir -p "${DEPS}"
- cd "${DEPS}" - cd "${DEPS}"
- ${CI_PROJECT_DIR}/travisci/get_dependencies.sh - ${CI_PROJECT_DIR}/travisci/get_dependencies.sh
- ${CI_PROJECT_DIR}/travisci/build_c.sh
- cd ${CI_PROJECT_DIR} - cd ${CI_PROJECT_DIR}
- export MACHTYPE=$(uname -m)
- cpanm -v --installdeps --notest . - cpanm -v --installdeps --notest .
- ( cd ensembl && cpanm -v --installdeps --notest . ) - ( cd ensembl && cpanm -v --installdeps --notest . )
- cpanm Bio::DB::HTS - cpanm Bio::DB::HTS
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