Merge pull request #112 from Ensembl/103_provider_metakeyupdate

ENSCORESW-3526 metakey changed from provider.* to assembly.provider_*

modules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm

@@ -327,7 +327,7 @@ sub print_main_header {
 
     # Get the build. name gives us GRCh37.p1 where as default gives us GRCh37
     my $assembly_name = $gc->get_assembly_name();
-    my $providers = $mc->list_value_by_key('provider.name') || '';
+    my $providers = $mc->list_value_by_key('assembly.provider_name') || '';
     my $provider = join(";", @$providers);
     print $fh "#!genome-build $provider $assembly_name\n" if $assembly_name;
 

scripts/gff3_serializer.pl

@@ -92,7 +92,7 @@ my $gc = $dba->get_GenomeContainer();
 
 # Get the build. name gives us GRCh37.p1 where as default gives us GRCh37
 my $assembly_name = $gc->get_assembly_name();
-my $providers = $mc->list_value_by_key('provider.name') || '';
+my $providers = $mc->list_value_by_key('assembly.provider_name') || '';
 my $provider = join(";", @$providers);
 $serializer->write(Bio::EnsEMBL::IO::Object::GXFMetadata->ens_directive('genome-build', $provider, $assembly_name)) if $assembly_name;
  

scripts/gtf_serializer.pl

@@ -90,7 +90,7 @@ my $gc = $dba->get_GenomeContainer();
 
 # Get the build. name gives us GRCh37.p1 where as default gives us GRCh37
 my $assembly_name = $gc->get_assembly_name();
-my $providers = $mc->list_value_by_key('provider.name') || '';
+my $providers = $mc->list_value_by_key('assembly.provider_name') || '';
 my $provider = join(";", @$providers);
 $serializer->write(Bio::EnsEMBL::IO::Object::GXFMetadata->ens_directive('genome-build', $provider, $assembly_name)) if $assembly_name;