This project is mirrored from https://:*****@github.com/Ensembl/ensembl-io.git.
Pull mirroring updated .
- Aug 14, 2015
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Anne Lyle authored
ENSWEB-1560: Overzealous caching of sample ids.
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Dan Sheppard authored
If an array then key by contents of array not the ref which we might be unlucky and have cached before and it been reused.
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- Jul 06, 2015
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Thibaut Hourlier authored
Fixed gff3.t
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Thibaut Hourlier authored
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Thibaut Hourlier authored
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Thibaut Hourlier authored
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- Jun 11, 2015
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Anne Lyle authored
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- Jun 10, 2015
- Jun 09, 2015
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Anne Lyle authored
Removed dependency on EnsEMBL::Web::Text::Feature::BED - fetch_features now returns an array of arrayrefs which can be used to populate these objects in the webcode.
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Anne Lyle authored
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Anne Lyle authored
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Anne Lyle authored
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Anne Lyle authored
Added methods to set min and max column count (have to set max manually, as some columns parsed into additional fields
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Anne Lyle authored
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Anne Lyle authored
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Anne Lyle authored
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Anne Lyle authored
Added setters and getters for maximum and minimum column count and a validation method that uses these values
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- Jun 03, 2015
- Jun 02, 2015
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Anne Lyle authored
fix for slightly clumsy passing of args to synonym methods
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William McLaren authored
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Laurent Gil authored
add non_ref_only option when fetching genotypes
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- Jun 01, 2015
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William McLaren authored
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- May 29, 2015
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Anne Lyle authored
Moved in from webcode (and removed dependency on E::W::Exceptions) so that the filehandling code can be shared with the trackhub registry
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- May 20, 2015
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Anne Lyle authored
* postreleasefix/80: Allow for extraneous whitespace between 'track' and track name
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Anne Lyle authored
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Anne Lyle authored
* postreleasefix/80: Added support for score-as-RGB
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Anne Lyle authored
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Laurent Gil authored
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- May 19, 2015
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Laurent Gil authored
Duplicate all methods that relate to individual data in a VCF file.
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Anja Thormann authored
For the duplicated methods replace individual by sample to match the new sample schema in the variation API.
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- May 12, 2015
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Matthieu Muffato authored
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- May 11, 2015
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Matthieu Muffato authored
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Matthieu Muffato authored
* commit 'f964092d': fixed method name: sequences -> get_sequences
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- Apr 23, 2015
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Anne Lyle authored
Non-extended summary retrieval for BigWigs.
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- Apr 21, 2015
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Anne Lyle authored
Commented out a warn, as it gets triggered even when the parser is working correctly and could fill up the web error logs with meaningless messages. Maybe the parser needs a verbose mode?
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- Apr 13, 2015
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Dan Sheppard authored
Saves us having to do the computation ourselves.
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- Apr 10, 2015