Add cadd parser
- Sep 21, 2018
-
-
Anja Thormann authored47ea6470
-
- Sep 18, 2018
-
-
Anja Thormann authored449fc9b8
-
- Sep 13, 2018
-
-
Anja Thormann authored0be5003f
-
Anja Thormann authored6e859f7f
-
Created by: at7
I added a new parser for reading data from a CADD tabixed TSV file. CADD scores a calculated genome wide for all possible single base changes. The format is: seqname start ref alt score.
We want to read the scores by position for annotating variants. The plan is to read scores from file rather than having to store them in a database.
We don't need to populate a very large variation_feature table (~690M rows) with more data.
Could be slow to annotate large regions with variants.
I added a test script which tests each method on the new module. travis build is failing due to DBD::mysql error.