Created by: ima23
Description
Some resources use .bgz as ending for a BGZF-compressed vcf files (example gnomAD). Currently TabixParser allows only .gz files to be read.
Use case
The current changes will allow users to use .vcf.bgz files for VEP custom annotations.
Benefits
TabixParser will be able to process .bgz files and allow extended VEP custom annotations.
Possible Drawbacks
If applicable, describe any possible undesirable consequence of the changes.
Testing
Have you added/modified unit tests to test the changes?
Yes.
If so, do the tests pass/fail?
Tests pass.
Have you run the entire test suite and no regression was detected?
Yes, tests passed.