ancestral_allele update (!83) · Merge requests · ensembl-gh-mirror / ensembl-io

Marek Szuba requested to merge ancestral_allele into master Apr 23, 2019

Created by: tgrego

Variation Bio::EnsEMBL::Variation::Variation::ancestral_allele method has been deprecated and replaced with Bio::EnsEMBL::Variation::VariationFeature::ancestral_allele.

Bio::EnsEMBL::IO::Translator::SampleGenotypeFeature uses the deprecated method and is now failing, so an update is required.

This fixes the issue by patching the test DBs and the test data object, and updated the deprecated method to the new one.

ancestral_allele update

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