Skip to content
GitLab
Projects Groups Topics Snippets
  • /
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
  • Sign in
  • E ensembl-io
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributor statistics
    • Graph
    • Compare revisions
    • Locked files
  • Issues 0
    • Issues 0
    • List
    • Boards
    • Service Desk
    • Milestones
    • Iterations
    • Requirements
  • Jira
    • Jira
  • Merge requests 0
    • Merge requests 0
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
    • Test cases
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Packages and registries
    • Packages and registries
    • Package Registry
    • Container Registry
    • Terraform modules
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Value stream
    • CI/CD
    • Code review
    • Insights
    • Issue
    • Repository
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • ensembl-gh-mirror
  • ensembl-io
  • Merge requests
  • !83

ancestral_allele update

  • Review changes

  • Download
  • Patches
  • Plain diff
Merged Marek Szuba requested to merge ancestral_allele into master Apr 23, 2019
  • Overview 1
  • Commits 3
  • Pipelines 0
  • Changes 8

Created by: tgrego

Variation Bio::EnsEMBL::Variation::Variation::ancestral_allele method has been deprecated and replaced with Bio::EnsEMBL::Variation::VariationFeature::ancestral_allele.

Bio::EnsEMBL::IO::Translator::SampleGenotypeFeature uses the deprecated method and is now failing, so an update is required.

This fixes the issue by patching the test DBs and the test data object, and updated the deprecated method to the new one.

Assignee
Assign to
Reviewers
Request review from
Time tracking
Source branch: ancestral_allele