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Duplicate all methods that relate to individual data in a VCF file.

Merged Marek Szuba requested to merge github/fork/at7/feature/new_sample_schema into master

Created by: at7

For the duplicated methods replace individual by sample to match the new sample schema in the variation API. The plan is to store all genotype information on sample level. For now leave methods that relate to individual. But deprecate them first and then remove them from the parser.

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