Skip to content

[ENSCORESW-3106] BCF parser

Marek Szuba requested to merge bcf_parser into master

Created by: tgrego

This PR brings a BCF parser to ensembl-io.

BCF is a compiled version of VCF, thus a writer is not required because it is built by compiling existing VCF files (and a VCF writer is available).

For querying capabilities an index of the .bcf file is required, this is a .bcf.csi file.

Testing is included and should be a good example of how to use the parser.

See ENSCORESW-3106 for more info.

Merge request reports