Merge requests · ensembl-gh-mirror / ensembl-io · GitLab

htsfile close function added

!35 · created Apr 15, 2016 by Marek Szuba master
- Merged
updated Apr 15, 2016
Existing TABIX functionality via Bio::DB::HTS

!32 · created Mar 14, 2016 by Marek Szuba master
- Merged
- 7
updated Mar 15, 2016
License was not correct. This is an Apache2 project.

!14 · created Aug 17, 2015 by Marek Szuba master
enhancement
- Merged
- 1
updated Aug 20, 2015
exclude samples with uncalled genotypes

!38 · created May 05, 2016 by Marek Szuba release/84
- Merged
- 2
updated May 06, 2016
Experimental/unified design

!54 · created Jun 21, 2017 by Marek Szuba experimental/unified-design
- Merged
- 5
updated Jun 30, 2017
Feature/blast parser

!1 · created Jul 11, 2014 by Marek Szuba master
- Merged
updated Dec 17, 2018
Update travis harness to point to the correct Bio-HTS lib version

!52 · created May 11, 2017 by Marek Szuba experimental/unified-design
- Merged
- 1
updated May 11, 2017
porting of PR 70 to master

!71 · created Dec 14, 2018 by Marek Szuba master
- Merged
updated Dec 17, 2018
Feature/htslib adds HTSAdaptor.pm

!25 · created Jan 04, 2016 by Marek Szuba release/83
- Merged
updated Jan 04, 2016
Changes required to support bigInteract format - ENSWEB-4751

!62 · created Aug 02, 2018 by Marek Szuba master
- Merged
- 8
updated Aug 14, 2018
Munge for Chr in HTSAdaptor as was for BAM Adaptor

!40 · created May 09, 2016 by Marek Szuba master
- Merged
updated May 09, 2016
Add VCF4 format for validation

!56 · created Jul 13, 2017 by Marek Szuba master
- Merged
- 3
updated Jul 19, 2017
Duplicate all methods that relate to individual data in a VCF file.

!9 · created May 19, 2015 by Marek Szuba master
- Merged
updated May 19, 2015
'defined' will return 1 if compression is provided

!31 · created Mar 07, 2016 by Marek Szuba release/84
- Merged
updated Dec 17, 2018
ENSCORESW-3526 updated provider.* metakeys to assembly.proivder_*

!110 · created Aug 17, 2020 by Marek Szuba release/101
- Merged
- 1
updated Aug 17, 2020
Fix for bug in GTF get_attribute_by_name

!18 · created Aug 21, 2015 by Marek Szuba master
- Merged
updated Aug 21, 2015
- Fixed bug in Fasta parser, where if the sequence wasn't accessed wh…

!21 · created Nov 11, 2015 by Marek Szuba master
- Merged
- 9
updated Dec 17, 2018
Check response status code instead of message for file fetch requests

!74 · created Feb 14, 2019 by Marek Szuba master
- Merged
- 3
updated Feb 14, 2019
add is_polymorphic method to aid LD genotype retrieval

!26 · created Jan 15, 2016 by Marek Szuba master
- Merged
updated Jan 15, 2016
include ftp support for trackhubs

!70 · created Dec 12, 2018 by Marek Szuba release/94
- Merged
- 1
updated Dec 17, 2018

Prev
1
2
3
4
5
6
7
…
9
Next