Merge requests · ensembl-gh-mirror / ensembl-io · GitLab

Experimental/unified design

!54 · created Jun 21, 2017 by Marek Szuba experimental/unified-design
- Merged
- 5
updated Jun 30, 2017
Update URL.pm

!41 · created May 20, 2016 by Marek Szuba master
- Merged
updated May 24, 2016
Bio::DB::HTS requirements added to README

!36 · created Apr 28, 2016 by Marek Szuba master
- Merged
updated Apr 28, 2016
htsfile close function added

!35 · created Apr 15, 2016 by Marek Szuba master
- Merged
updated Apr 15, 2016
First try for a VCF4 writer

!48 · created Aug 12, 2016 by Marek Szuba experimental/unified-design
- Merged
- 31
updated Jan 09, 2017
exclude samples with uncalled genotypes

!38 · created May 05, 2016 by Marek Szuba release/84
- Merged
- 2
updated May 06, 2016
correct tabix header function called in PairwiseAdaptor.pm

!47 · created Aug 10, 2016 by Marek Szuba master
- Merged
updated Dec 17, 2018
exclude samples with uncalled genotypes

!37 · created May 05, 2016 by Marek Szuba master
- Merged
updated May 05, 2016
Update fetch_file in URL.pm

!42 · created May 25, 2016 by Marek Szuba master
- Merged
updated May 25, 2016
call DESTROY to close tabix file

!43 · created May 31, 2016 by Marek Szuba master
- Merged
- 2
updated May 31, 2016
Munge for Chr in HTSAdaptor as was for BAM Adaptor

!40 · created May 09, 2016 by Marek Szuba master
- Merged
updated May 09, 2016
Existing TABIX functionality via Bio::DB::HTS

!32 · created Mar 14, 2016 by Marek Szuba master
- Merged
- 7
updated Mar 15, 2016
Alter genotype field return type

!29 · created Feb 23, 2016 by Marek Szuba master
- Merged
updated Feb 24, 2016
Alter genotype field return type

!30 · created Feb 23, 2016 by Marek Szuba release/83
- Merged
updated Feb 23, 2016
Existing patches to make bigfile fail softly.

!23 · created Dec 03, 2015 by Marek Szuba master
- Merged
updated Dec 03, 2015
add is_polymorphic method to aid LD genotype retrieval

!26 · created Jan 15, 2016 by Marek Szuba master
- Merged
updated Jan 15, 2016
code now also checks for Chr

!22 · created Nov 11, 2015 by Marek Szuba master
- Merged
updated May 06, 2016
Feature/htslib adds HTSAdaptor.pm

!25 · created Jan 04, 2016 by Marek Szuba release/83
- Merged
updated Jan 04, 2016
Meaningful help on HTTP::Tiny errors.

!28 · created Feb 12, 2016 by Marek Szuba master
- Merged
updated Feb 18, 2016
- Fixed bug in Fasta parser, where if the sequence wasn't accessed wh…

!21 · created Nov 11, 2015 by Marek Szuba master
- Merged
- 9
updated Dec 17, 2018

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