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Commit f5a480ac authored by William McLaren's avatar William McLaren
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use get_best_compara_DBAdaptor as recommended by compara

parent a980c259
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1 merge request!87Fixes so Conservation plugin works (master)
......@@ -93,8 +93,9 @@ sub get_species : Chained('/') PathPart('vep') CaptureArgs(1) {
}
# get compara adaptors
$c->stash( mlssa => $c->model('Registry')->get_adaptor( 'Multi', 'compara', 'MethodLinkSpeciesSet' ) );
$c->stash( cosa => $c->model('Registry')->get_adaptor( 'Multi', 'compara', 'ConservationScore' ) );
my $compara_dba = $c->model('Registry')->get_best_compara_DBAdaptor($species, $c->request()->param('compara'));
$c->stash( mlssa => $compara_dba->get_MethodLinkSpeciesSetAdaptor() );
$c->stash( cosa => $compara_dba->get_ConservationScoreAdaptor() );
} catch {
$c->log->fatal(qq{problem making Bio::EnsEMBL::Variation::VariationFeature object});
$c->go('ReturnError', 'from_ensembl', [qq{$_}]) if $_ =~ /STACK/;
......
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