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remove ExAC plugin docs, add refseq and merged opts

Merged Marek Szuba requested to merge github/fork/willmclaren/master into master
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@@ -63,6 +63,16 @@
description=Include aligned RefSeq mRNA identifiers for transcript. NB: theRefSeq and Ensembl transcripts aligned in this way MAY NOT, AND FREQUENTLY WILL NOT, match exactly in sequence, exon structure and protein product
default=0
</xref_refseq>
<refseq>
type=Boolean
description=Use RefSeq transcript set to report consequences (human only)
default=0
</refseq>
<merged>
type=Boolean
description=Use merged Ensembl and RefSeq transcript set to report consequences (human only)
default=0
</merged>
<Blosum62>
type=Boolean
description=Include BLOSUM62 amino acid conservation score (<a target="_blank" href="https://raw.githubusercontent.com/ensembl-variation/VEP_plugins/master/Blosum62.pm">plugin details</a>)
@@ -89,11 +99,6 @@
description=Predictions for splicing variants from dbscSNV. (<a target="_blank" href="https://raw.githubusercontent.com/ensembl-variation/VEP_plugins/master/dbscSNV.pm">plugin details</a>)
default=0
</dbscSNV>
<ExAC>
type=Boolean
description=Reports allele frequencies from the Exome Aggregation Consortium (<a target="_blank" href="https://raw.githubusercontent.com/ensembl-variation/VEP_plugins/master/ExAC.pm">plugin details</a>)
default=0
</ExAC>
<GeneSplicer>
type=Boolean
description=Detects splice sites in genomic DNA (<a target="_blank" href="https://raw.githubusercontent.com/ensembl-variation/VEP_plugins/master/GeneSplicer.pm">plugin details</a>)