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ensembl-gh-mirror
ensembl-test
Commits
c3eaeb8d
Unverified
Commit
c3eaeb8d
authored
Apr 17, 2020
by
Ameya Chaubal
Committed by
GitHub
Apr 17, 2020
Browse files
Merge pull request #49 from Ensembl/e102_versionbump
test db patching, version bump
parents
79ebd670
622ea8ea
Pipeline
#79669
failed with stage
in 3 minutes and 59 seconds
Changes
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6 changed files
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9 additions
and
6 deletions
+9
-6
modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
+2
-1
modules/t/test-genome-DBs/homo_sapiens/core/table.sql
modules/t/test-genome-DBs/homo_sapiens/core/table.sql
+1
-1
modules/t/test-genome-DBs/multi/compara/meta.txt
modules/t/test-genome-DBs/multi/compara/meta.txt
+2
-1
modules/t/test-genome-DBs/multi/compara/table.sql
modules/t/test-genome-DBs/multi/compara/table.sql
+1
-1
modules/t/test-genome-DBs/mus_musculus/core/meta.txt
modules/t/test-genome-DBs/mus_musculus/core/meta.txt
+2
-1
modules/t/test-genome-DBs/mus_musculus/core/table.sql
modules/t/test-genome-DBs/mus_musculus/core/table.sql
+1
-1
No files found.
modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
View file @
c3eaeb8d
1 \N schema_version 10
1
1 \N schema_version 10
2
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
...
...
@@ -116,3 +116,4 @@
190 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
191 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
192 \N patch patch_100_101_a.sql|schema_version
193 \N patch patch_101_102_a.sql|schema_version
modules/t/test-genome-DBs/homo_sapiens/core/table.sql
View file @
c3eaeb8d
...
...
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY
KEY
(
`meta_id`
),
UNIQUE
KEY
`species_key_value_idx`
(
`species_id`
,
`meta_key`
,
`meta_value`
),
KEY
`species_value_idx`
(
`species_id`
,
`meta_value`
)
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
19
3
DEFAULT
CHARSET
=
latin1
;
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
19
4
DEFAULT
CHARSET
=
latin1
;
CREATE
TABLE
`meta_coord`
(
`table_name`
varchar
(
40
)
COLLATE
latin1_bin
NOT
NULL
DEFAULT
''
,
...
...
modules/t/test-genome-DBs/multi/compara/meta.txt
View file @
c3eaeb8d
7
2
\N schema_version 10
1
7
9
\N schema_version 10
2
2 \N schema_type compara
3 \N patch patch_84_85_a.sql|schema_version
4 \N patch patch_84_85_b.sql|gene_tree_root_attr
...
...
@@ -62,3 +62,4 @@
76 \N patch patch_100_101_d.sql|gat.node_ids
77 \N patch patch_100_101_e.sql|positive_int
78 \N patch patch_100_101_f.sql|gab.direction
80 \N patch patch_101_102_a.sql|schema_version
modules/t/test-genome-DBs/multi/compara/table.sql
View file @
c3eaeb8d
...
...
@@ -429,7 +429,7 @@ CREATE TABLE `meta` (
PRIMARY
KEY
(
`meta_id`
),
UNIQUE
KEY
`species_key_value_idx`
(
`species_id`
,
`meta_key`
,
`meta_value`
(
255
)),
KEY
`species_value_idx`
(
`species_id`
,
`meta_value`
(
255
))
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
79
DEFAULT
CHARSET
=
latin1
;
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
81
DEFAULT
CHARSET
=
latin1
;
CREATE
TABLE
`method_link`
(
`method_link_id`
int
(
10
)
unsigned
NOT
NULL
AUTO_INCREMENT
,
...
...
modules/t/test-genome-DBs/mus_musculus/core/meta.txt
View file @
c3eaeb8d
1 \N schema_type core
2 \N schema_version 10
1
2 \N schema_version 10
2
3 \N patch patch_65_66_a.sql|schema_version
4 \N patch patch_65_66_b.sql|fix_external_db_id
5 \N patch patch_65_66_c.sql|reorder_unmapped_obj_index
...
...
@@ -194,3 +194,4 @@
1706 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
1707 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
1708 \N patch patch_100_101_a.sql|schema_version
1709 \N patch patch_101_102_a.sql|schema_version
modules/t/test-genome-DBs/mus_musculus/core/table.sql
View file @
c3eaeb8d
...
...
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY
KEY
(
`meta_id`
),
UNIQUE
KEY
`species_key_value_idx`
(
`species_id`
,
`meta_key`
,
`meta_value`
),
KEY
`species_value_idx`
(
`species_id`
,
`meta_value`
)
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
170
9
DEFAULT
CHARSET
=
latin1
;
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
17
1
0
DEFAULT
CHARSET
=
latin1
;
CREATE
TABLE
`meta_coord`
(
`table_name`
varchar
(
40
)
COLLATE
latin1_bin
NOT
NULL
DEFAULT
''
,
...
...
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