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ensembl-gh-mirror
ensembl-test
Commits
ccc51ffe
Commit
ccc51ffe
authored
Mar 20, 2020
by
Ameya Chaubal
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patching compara ref
https://github.com/Ensembl/ensembl/pull/476
(cherry picked from commit
9c97de88
)
parent
c693f9bb
Pipeline
#66935
passed with stage
in 3 minutes and 59 seconds
Changes
3
Pipelines
1
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3 changed files
with
20 additions
and
18 deletions
+20
-18
modules/t/test-genome-DBs/multi/compara/genomic_align_block.txt
...s/t/test-genome-DBs/multi/compara/genomic_align_block.txt
+17
-17
modules/t/test-genome-DBs/multi/compara/meta.txt
modules/t/test-genome-DBs/multi/compara/meta.txt
+1
-0
modules/t/test-genome-DBs/multi/compara/table.sql
modules/t/test-genome-DBs/multi/compara/table.sql
+2
-1
No files found.
modules/t/test-genome-DBs/multi/compara/genomic_align_block.txt
View file @
ccc51ffe
6770001148173 677 126795 \N 124 6770005241202 1
6770001148174 677 126795 \N 999 6770005241202 1
6770001148176 677 126795 \N 337 6770005241202 1
6770001148178 677 126795 \N 688 6770005241202 1
6770001148179 677 126795 \N 832 6770005241202 1
6770001148181 677 126795 \N 92 6770005241202 1
6770001148183 677 126795 \N 660 6770005241202 1
6770001148185 677 126795 \N 763 6770005241202 1
6770001148285 677 7059 \N 289 6770005270575 1
6770001148328 677 172177 \N 1048 6770004847974 1
6770001148329 677 172177 \N 333 6770004847974 1
6770001148330 677 172177 \N 383 6770004847974 1
6770001148331 677 172177 \N 795 6770004847974 1
6770001148332 677 172177 \N 437 6770004847974 1
6770001148333 677 172177 \N 1176 6770004847974 1
6770001148334 677 172177 \N 796 6770004847974 1
6770001148335 677 172177 \N 884 6770004847974 1
6770001148173 677 126795 \N 124 6770005241202 1
\N
6770001148174 677 126795 \N 999 6770005241202 1
\N
6770001148176 677 126795 \N 337 6770005241202 1
\N
6770001148178 677 126795 \N 688 6770005241202 1
\N
6770001148179 677 126795 \N 832 6770005241202 1
\N
6770001148181 677 126795 \N 92 6770005241202 1
\N
6770001148183 677 126795 \N 660 6770005241202 1
\N
6770001148185 677 126795 \N 763 6770005241202 1
\N
6770001148285 677 7059 \N 289 6770005270575 1
\N
6770001148328 677 172177 \N 1048 6770004847974 1
\N
6770001148329 677 172177 \N 333 6770004847974 1
\N
6770001148330 677 172177 \N 383 6770004847974 1
\N
6770001148331 677 172177 \N 795 6770004847974 1
\N
6770001148332 677 172177 \N 437 6770004847974 1
\N
6770001148333 677 172177 \N 1176 6770004847974 1
\N
6770001148334 677 172177 \N 796 6770004847974 1
\N
6770001148335 677 172177 \N 884 6770004847974 1
\N
modules/t/test-genome-DBs/multi/compara/meta.txt
View file @
ccc51ffe
...
...
@@ -61,3 +61,4 @@
75 \N patch patch_100_101_c.sql|mlss_attr.n_goc_null
76 \N patch patch_100_101_d.sql|gat.node_ids
77 \N patch patch_100_101_e.sql|positive_int
78 \N patch patch_100_101_f.sql|gab.direction
modules/t/test-genome-DBs/multi/compara/table.sql
View file @
ccc51ffe
...
...
@@ -320,6 +320,7 @@ CREATE TABLE `genomic_align_block` (
`length`
int
(
10
)
NOT
NULL
,
`group_id`
bigint
(
20
)
unsigned
DEFAULT
NULL
,
`level_id`
tinyint
(
2
)
unsigned
NOT
NULL
DEFAULT
'0'
,
`direction`
tinyint
(
1
)
unsigned
DEFAULT
NULL
,
PRIMARY
KEY
(
`genomic_align_block_id`
),
KEY
`method_link_species_set_id`
(
`method_link_species_set_id`
)
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
6770001148336
DEFAULT
CHARSET
=
latin1
;
...
...
@@ -428,7 +429,7 @@ CREATE TABLE `meta` (
PRIMARY
KEY
(
`meta_id`
),
UNIQUE
KEY
`species_key_value_idx`
(
`species_id`
,
`meta_key`
,
`meta_value`
(
255
)),
KEY
`species_value_idx`
(
`species_id`
,
`meta_value`
(
255
))
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
7
8
DEFAULT
CHARSET
=
latin1
;
)
ENGINE
=
MyISAM
AUTO_INCREMENT
=
7
9
DEFAULT
CHARSET
=
latin1
;
CREATE
TABLE
`method_link`
(
`method_link_id`
int
(
10
)
unsigned
NOT
NULL
AUTO_INCREMENT
,
...
...
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