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ensembl-gh-mirror
ensembl
Commits
015c17b6
Commit
015c17b6
authored
21 years ago
by
Graham McVicker
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added seq_region_annotation table, renamed some cols of assembly table
parent
d9625dd9
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docs/ensembl_changes_spec.txt
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-11
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docs/ensembl_changes_spec.txt
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015c17b6
...
@@ -32,29 +32,37 @@ Proposed New/Modified Tables:
...
@@ -32,29 +32,37 @@ Proposed New/Modified Tables:
-----------------------------
-----------------------------
seq_region
seq_region
-------
-------
---
seq_region_id int
seq_region_id int
name varchar
name varchar
coord_system varchar (or maybe enum)
coord_system varchar (or maybe enum)
version varchar
version
varchar
default enum(true, false)
default
enum(true, false)
length int
length int
seq_region_annotation
---------------------
seq_region_id int
attrib enum(htg_phase) (possibly varchar, more values needed)
value varchar
dna
dna
---
---
seq_region_id int
seq_region_id int
sequence varchar
sequence
varchar
assembly
assembly
--------
--------
seq_region_id
_assembled
int
asm_
seq_region_id int
seq_region_id_component
int
asm_start
int
component_start
int
asm_end
int
c
o
mp
onent_end
int
cmp
_seq_region_id
int
assembled
_start int
cmp
_start int
assembly
_end
int
cmp
_end int
ori
entation
tinyint (or enum?)
ori
tinyint (or enum?)
gene
gene
----
----
...
...
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