commented variation specific code in dumpGene as no longer works

misc-scripts/ebi_search_dump/ebi_search_dump_generic.pl

@@ -394,11 +394,11 @@ WHERE
         }
 
         # SNP query
-        my $snp_sth = eval {
-            $dbh->prepare(
-"select distinct(vf.variation_name) from $SNPDB.transcript_variation as tv, $SNPDB.variation_feature as vf where vf.variation_feature_id = tv.variation_feature_id and tv.transcript_stable_id in(?)"
-            );
-        };
+#        my $snp_sth = eval {
+#            $dbh->prepare(
+#"select distinct(vf.variation_name) from $SNPDB.transcript_variation as tv, $SNPDB.variation_feature as vf where vf.variation_feature_id = tv.variation_feature_id and tv.transcript_stable_id in(?)"
+#            );
+#        };
 
         my $haplotypes = $dbh->selectall_hashref(
             "select gene_id from gene g, assembly_exception ae where
@@ -517,12 +517,13 @@ g.seq_region_id=ae.seq_region_id and ae.exc_type='HAP'", [qw(gene_id)]
             if ( $old{'gene_id'} != $gene_id ) {
                 if ( $old{'gene_id'} ) {
 
-                    if ( $SNPDB && $DB eq 'core' ) {
-                        my @transcript_stable_ids =
-                          keys %{ $old{transcript_stable_ids} };
-                        $snp_sth->execute("@transcript_stable_ids");
-                        $old{snps} = $snp_sth->fetchall_arrayref;
-                    }
+
+#                    if ( $SNPDB && $DB eq 'core' ) {
+#                        my @transcript_stable_ids =
+#                          keys %{ $old{transcript_stable_ids} };
+#                        $snp_sth->execute("@transcript_stable_ids");
+#                        $old{snps} = $snp_sth->fetchall_arrayref;
+#                    }
 
                     if ($want_species_orthologs) {
                         $old{orthologs} =
@@ -643,11 +644,11 @@ g.seq_region_id=ae.seq_region_id and ae.exc_type='HAP'", [qw(gene_id)]
             }
         }
 
-        if ( $SNPDB && $DB eq 'core' ) {
-            my @transcript_stable_ids = keys %{ $old{transcript_stable_ids} };
-            $snp_sth->execute("@transcript_stable_ids");
-            $old{snps} = $snp_sth->fetchall_arrayref;
-        }
+#        if ( $SNPDB && $DB eq 'core' ) {
+#            my @transcript_stable_ids = keys %{ $old{transcript_stable_ids} };
+#            $snp_sth->execute("@transcript_stable_ids");
+#            $old{snps} = $snp_sth->fetchall_arrayref;
+#        }
         if ($want_species_orthologs) {
             $old{orthologs} = $ortholog_lookup->{ $old{'gene_stable_id'} };