Commit 04a15da4 authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
Browse files

New attribs from Ensembl Genomes (Uma).

Folded some older comments for readability.
parent ce36d9db
......@@ -308,19 +308,29 @@
184 TRGeneCount TR_gene Number of TR Genes
185 TRPsCount TR_pseudo Number of TR Pseudogenes
# attribute that shows if a supporting evidence was also used to build a Vega gene model
# attribute that shows if a supporting evidence was also used to build a
# Vega gene model
186 tp_ott_support otter protein transcript support Evidence ID that was used as supporting feature for building a gene in Vega
187 td_ott_support otter dna transcript support Evidence ID that was used as supporting feature for building a gene in Vega
188 ep_ott_support otter protein exon support Evidence ID that was used as supporting feature for building a gene in Vega
189 ed_ott_support otter dna exon support Evidence ID that was used as supporting feature for building a gene in Vega
# Attributes like ie split_tscript incons_strands incons_phases is_folded unwanted_evidence
# exon_too_long contains_stops borked_coords low_complex evi_coverage are added by BlastMiniGenewise in the build process.
# They can be deleted out of transcript_attrib and attrib_type table
# Attributes like split_tscript, incons_strands, incons_phases,
# is_folded, unwanted_evidence, exon_too_long, contains_stops,
# borked_coords, low_complex, and evi_coverage are added by
# BlastMiniGenewise in the build process. They can be deleted out of
# transcript_attrib and attrib_type table
190 GeneNo_lincRNA lincRNA Gene Count Number of lincRNA Genes
# StopGained and StopLost are transcript attributes.
# StopGained and StopLost are transcript attributes.
191 StopGained SNP causes stop codon to be gained This transcript has a variant that causes a stop codon to be gained in at least 10 percent of a HapMap population
192 StopLost SNP causes stop codon to be lost This transcript has a variant that causes a stop codon to be lost in at least 10 percent of a HapMap population
# For Ensembl Genomes dictyBase (2010-02-16).
# (code 193 should have a trailing '_' as it is auto-generated)
193 GeneNo_class_I_ class_I_RNA Gene Count Number of class_I_RNA Genes
194 GeneNo_SRP_RNA SRP_RNA Gene Count Number of SRP_RNA Genes
195 GeneNo_class_II class_II_RNA Gene Count Number of class_II_RNA Genes
196 GeneNo_P_RNA RNase_P_RNA Gene Count Number of RNase_P_RNA Genes
197 GeneNo_RNase_MR RNase_MRP_RNA Gene Count Number of RNase_MRP_RNA Genes
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