Skip to content
Snippets Groups Projects
Commit 05d5a366 authored by James Allen's avatar James Allen
Browse files

GFF export: Setting strand of unstranded features to '.'

parent 4133a3e9
No related branches found
No related tags found
3 merge requests!27GFF3 export: unstranded features and using analysis.gff_source,!27GFF3 export: unstranded features and using analysis.gff_source,!27GFF3 export: unstranded features and using analysis.gff_source
Hide whitespace changes
Inline Side-by-side
modules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm
+ 2
− 2
View file @ 05d5a366
......@@ -55,7 +55,7 @@ use Bio::EnsEMBL::Utils::Scalar qw/check_ref/;
use base qw(Bio::EnsEMBL::Utils::IO::FeatureSerializer);
my %strand_conversion = ( '1' => '+', '0' => '?', '-1' => '-');
my %strand_conversion = ( '1' => '+', '0' => '.', '-1' => '-');
=head2 new
......@@ -167,7 +167,7 @@ sub print_feature {
$row .= $strand_conversion{$summary{'strand'}}."\t";
}
else {
$row .= ".\t";
$row .= "?\t";
}
# Column 8 - reading phase, necessary only for Exons
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment