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ensembl-gh-mirror
ensembl
Commits
0786f0a9
Commit
0786f0a9
authored
22 years ago
by
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Fixed so that protein hits without corresponding InterPro hits still come out
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fb86bb41
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modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm
+3
-4
3 additions, 4 deletions
modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm
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3 additions
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4 deletions
modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm
+
3
−
4
View file @
0786f0a9
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@@ -233,11 +233,10 @@ sub fetch_all_by_feature_and_dbID{
p.score, p.perc_ident, p.evalue,
p.hit_start, p.hit_end, p.hit_id,
x.display_label
FROM protein_feature p,interpro i,analysis a,
xref x
FROM protein_feature p,analysis a
left join interpro as i on p.hit_id = i.id
left join xref as x on x.dbprimary_acc = i.interpro_ac
WHERE p.translation_id = '
$transl
'
AND i.id = p.hit_id
AND i.interpro_ac = x.dbprimary_acc
AND p.analysis_id = a.analysis_id
AND a.gff_feature = 'domain'
AND a.gff_source = '
$feature
'
");
...
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