analysis.descriptions

misc-scripts/analysis_description/analysis.descriptions

@@ -341,6 +341,7 @@
 340	pig_cdna	Pig cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external"	href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>.pig cDNA	1	{'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
 341	pig_est	Pig 'Expressed Sequence Tags' (ESTs) from the <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> database are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>.	pig EST	1	{'type'=>'est'}
 342	pig_protein	Pig protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)	pig protein	1
-343	ensembl_havana_IG_gene	---	---	1	{'colour_key' => '[biotype]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label'}}
-344	havana_IG_gene	---	---	1	{'colour_key' => '[biotype]_[status]','caption' => 'Ensembl/Havana gene','label_key' => '[text_label] [display_label]','name' => 'Merged Ensembl and Havana Genes','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label'},'key' => 'ensembl'}
-345	ncRNA_pseudogene	---	---	1	{'colour_key' => 'rna_[status]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label'}}
+343	ensembl_havana_IG_gene	Immunoglobulin (Ig) and T-cell receptor (TcR) genes where the Ensembl models build from the set imported from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&amp;HITS=10&amp;hits=10&amp;RESULTFORMAT=1&amp;author1=Lefranc&amp;andorexacttitle=and&amp;andorexacttitleabs=and&amp;andorexactfulltext=and&amp;searchid=1&amp;FIRSTINDEX=0&amp;sortspec=relevance&amp;resourcetype=HWCIT">IMGT</a> database using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a> overlap one of the gene models imported from the manually annotated IG gene set from the <a rel="external" href="http://www.sanger.ac.uk/HGP/havana/havana.shtml">Havana</a> project.	Ig/T-cell receptor gene	1	{'colour_key' => '[biotype]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label'}}
+344	havana_IG_gene	Immunoglobulin (Ig) and T-cell receptor (TcR) genes imported from the manually annotated IG gene set from the <a rel="external" href="http://www.sanger.ac.uk/HGP/havana/havana.shtml">Havana</a> project.	Vega gene	1	{'colour_key' => '[biotype]_[status]','caption' => 'Ensembl/Havana gene','label_key' => '[text_label] [display_label]','name' => 'Merged Ensembl and Havana Genes','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label'},'key' => 'ensembl'}
+345	ncRNA_pseudogene	ncRNA pseudogenes imported from the manual annotation produced by Sean Eddy group.	ncRNA pseudogene	1	{'colour_key' => 'rna_[status]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label'}}
+346	xrefcoordinatemapping	xrefcoordinatemapping	xrefcoordinatemapping	1