Commit 0c80deb1 authored by premanand17's avatar premanand17
Browse files

Applied e92 patches for test databases

parent ff4bc8fa
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:13:36 2017
-- Created on Fri Jan 12 13:37:14 2018
--
BEGIN TRANSACTION;
......@@ -736,7 +736,9 @@ CREATE TABLE protein_feature (
evalue double precision,
perc_ident float,
external_data text,
hit_description text
hit_description text,
cigar_line text,
align_type enum
);
CREATE UNIQUE INDEX aln_idx ON protein_feature (translation_id, hit_name, seq_start, seq_end, hit_start, hit_end, analysis_id);
......
......@@ -39,7 +39,7 @@
95 \N patch patch_83_84_c.sql|protein_feature_unique
96 \N patch patch_83_84_d.sql|longer_synonym
1 \N schema_type core
2 \N schema_version 91
2 \N schema_version 92
8 1 assembly.accession GCA_000292705.1
10 1 assembly.date 2012-08
7 1 assembly.default GCA_000292705.1
......@@ -114,3 +114,5 @@
114 \N patch patch_90_91_b.sql|align_type
115 \N patch patch_90_91_c.sql|protein_align_type
116 \N patch patch_90_91_d.sql|remove_external_data
117 \N patch patch_91_92_a.sql|schema_version
118 \N patch patch_91_92_b.sql|add_cigar_line_align_type
......@@ -476,7 +476,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=117 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=119 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -663,6 +663,8 @@ CREATE TABLE `protein_feature` (
`perc_ident` float DEFAULT NULL,
`external_data` text COLLATE latin1_bin,
`hit_description` text COLLATE latin1_bin,
`cigar_line` text COLLATE latin1_bin,
`align_type` enum('ensembl','cigar','cigarplus','vulgar','mdtag') COLLATE latin1_bin DEFAULT NULL,
PRIMARY KEY (`protein_feature_id`),
UNIQUE KEY `aln_idx` (`translation_id`,`hit_name`,`seq_start`,`seq_end`,`hit_start`,`hit_end`,`analysis_id`),
KEY `translation_idx` (`translation_id`),
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:13:47 2017
-- Created on Fri Jan 12 13:37:26 2018
--
BEGIN TRANSACTION;
......@@ -736,7 +736,9 @@ CREATE TABLE protein_feature (
evalue double precision,
perc_ident float,
external_data text,
hit_description text
hit_description text,
cigar_line text,
align_type enum
);
CREATE UNIQUE INDEX aln_idx ON protein_feature (translation_id, hit_name, seq_start, seq_end, hit_start, hit_end, analysis_id);
......
1 \N schema_version 91
1 \N schema_version 92
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -93,3 +93,5 @@
160 \N patch patch_90_91_b.sql|align_type
161 \N patch patch_90_91_c.sql|protein_align_type
162 \N patch patch_90_91_d.sql|remove_external_data
163 \N patch patch_91_92_a.sql|schema_version
164 \N patch patch_91_92_b.sql|add_cigar_line_align_type
27374 21716 76 99 45 75 0 41 0.00 0 0 \N \N
217249 21716 47 151 49 79 PF000001 41 87.10 8.2e-25 0 \N \N
242732 21716 80 160 71 101 0 41 0.00 0.000000000032 0 \N \N
217179 21717 1 94 49 79 PF000019 41 99.10 3.3e-28 0 \N \N
242734 21717 3 91 71 101 0 41 0.00 0.0000000000000017 0 \N \N
217309 21718 76 201 49 79 PF000019 41 118.90 8.9e-34 0 \N \N
242735 21718 1 185 71 101 0 41 0.00 0.00000000000003 0 \N \N
27378 21719 90 117 45 75 0 41 0.00 0 0 \N \N
83043 21719 21 41 44 74 0 41 2.37 0 0 \N \N
242736 21719 76 124 71 101 0 41 0.00 0.0017 0 \N \N
24545 21720 79 101 46 76 0 41 0.00 0 0 \N \N
24546 21720 106 123 46 76 0 41 0.00 0 0 \N \N
24547 21720 138 155 46 76 0 41 0.00 0 0 \N \N
24548 21720 192 214 46 76 0 41 0.00 0 0 \N \N
83044 21720 37 59 44 74 0 41 2.67 0 0 \N \N
116148 21720 93 100 42 72 0 41 0.00 0 0 \N \N
83051 21721 24 37 44 74 0 41 2.30 0 0 \N \N
83052 21721 170 184 44 74 0 41 1.97 0 0 \N \N
83053 21721 212 235 44 74 0 41 2.47 0 0 \N \N
242779 21721 47 146 71 101 0 41 0.00 0.002 0 \N \N
83045 21722 135 149 44 74 0 41 1.97 0 0 \N \N
83046 21722 171 187 44 74 PF000001 41 1.66 0 0 \N \N
83047 21722 217 230 44 74 0 41 1.09 0 0 \N \N
83048 21722 361 376 44 74 0 41 2.44 0 0 \N \N
83049 21722 470 482 44 74 0 41 2.20 0 0 \N \N
83050 21722 512 520 44 74 0 41 0.76 0 0 \N \N
116149 21722 347 358 42 72 0 41 0.00 0 0 \N \N
116150 21723 268 290 42 72 0 41 1.00 0 0 \N \N
116151 21723 377 389 42 72 0 41 1.00 0 0 \N \N
130095 21723 144 241 41 71 0 41 26.88 0 0 \N \N
130097 21723 78 138 41 71 0 41 19.62 0 0 \N \N
161506 21723 144 158 40 70 0 41 394.00 0.00000981 0 \N \N
161508 21723 165 175 40 70 0 41 321.00 0.0000259 0 \N \N
161510 21723 177 188 40 70 0 41 288.00 0.00000103 0 \N \N
161512 21723 194 204 40 70 0 41 295.00 0.0000486 0 \N \N
161514 21723 215 229 40 70 0 41 349.00 0.0000007 0 \N \N
161516 21723 81 91 40 70 0 41 266.00 0.0000318 0 \N \N
161518 21723 95 110 40 70 0 41 334.00 0.000000138 0 \N \N
161520 21723 111 120 40 70 0 41 225.00 0.0222 0 \N \N
161522 21723 124 136 40 70 0 41 341.00 0.00000182 0 \N \N
161524 21723 83 103 40 70 0 41 565.00 0.00000000711 0 \N \N
161526 21723 103 119 40 70 0 41 188.00 0.099 0 \N \N
217502 21723 83 138 49 79 58 41 98.90 6.4e-27 0 \N \N
217503 21723 146 228 49 79 79 41 150.90 1.5e-42 0 \N \N
217504 21723 264 513 49 79 294 41 260.80 1.2e-75 0 \N \N
242780 21723 244 526 71 101 0 41 0.00 2.3e-79 0 \N \N
242781 21723 138 282 71 101 0 41 0.00 1.3e-33 0 \N \N
242782 21723 81 162 71 101 0 41 0.00 2.5e-22 0 \N \N
24549 21724 263 285 46 76 0 41 0.00 0 0 \N \N
24550 21724 329 351 46 76 0 41 0.00 0 0 \N \N
24551 21724 361 383 46 76 0 41 0.00 0 0 \N \N
24552 21724 396 418 46 76 0 41 0.00 0 0 \N \N
24553 21724 433 455 46 76 0 41 0.00 0 0 \N \N
24554 21724 483 505 46 76 0 41 0.00 0 0 \N \N
24555 21724 515 537 46 76 0 41 0.00 0 0 \N \N
24556 21724 550 572 46 76 0 41 0.00 0 0 \N \N
24557 21724 587 609 46 76 0 41 0.00 0 0 \N \N
83054 21724 270 275 44 74 0 41 0.92 0 0 \N \N
83055 21724 326 335 44 74 0 41 1.97 0 0 \N \N
83056 21724 367 378 44 74 0 41 2.05 0 0 \N \N
83057 21724 513 529 44 74 0 41 2.42 0 0 \N \N
217569 21724 37 583 49 79 600 41 1244.70 0 0 \N \N
242783 21724 3 576 71 101 0 41 0.00 0.0058 0 \N \N
27431 21725 113 133 45 75 0 41 0.00 0 0 \N \N
83058 21725 30 40 44 74 0 41 1.87 0 0 \N \N
83059 21725 109 135 44 74 0 41 2.49 0 0 \N \N
217397 21725 146 331 49 79 324 41 84.50 1.4e-22 0 \N \N
83060 21726 369 397 44 74 0 41 2.53 0 0 \N \N
83061 21726 417 432 44 74 0 41 2.30 0 0 \N \N
83062 21726 443 458 44 74 0 41 2.43 0 0 \N \N
116152 21726 70 92 42 72 0 41 1.00 0 0 \N \N
116153 21726 100 120 42 72 0 41 1.00 0 0 \N \N
116154 21726 129 149 42 72 0 41 1.00 0 0 \N \N
116155 21726 158 178 42 72 0 41 1.00 0 0 \N \N
116156 21726 193 213 42 72 0 41 0.00 0 0 \N \N
116157 21726 221 242 42 72 0 41 1.00 0 0 \N \N
130099 21726 68 97 41 71 0 41 14.81 0 0 \N \N
130101 21726 98 125 41 71 0 41 11.68 0 0 \N \N
130103 21726 127 154 41 71 0 41 9.56 0 0 \N \N
130105 21726 156 183 41 71 0 41 9.54 0 0 \N \N
130107 21726 191 218 41 71 0 41 12.09 0 0 \N \N
130109 21726 219 247 41 71 0 41 11.28 0 0 \N \N
217476 21726 68 94 49 79 24 41 12.80 0.29 0 \N \N
217477 21726 100 122 49 79 24 41 25.30 0.000092 0 \N \N
217478 21726 129 151 49 79 24 41 19.70 0.0045 0 \N \N
217479 21726 158 180 49 79 24 41 19.20 0.0063 0 \N \N
217480 21726 193 215 49 79 24 41 22.90 0.00049 0 \N \N
217481 21726 221 244 49 79 24 41 24.00 0.00023 0 \N \N
242784 21726 80 124 71 101 0 41 0.00 0.0000000015 0 \N \N
242785 21726 205 245 71 101 0 41 0.00 0.0000000075 0 \N \N
242786 21726 58 85 71 101 0 41 0.00 0.0011 0 \N \N
34517 21727 1 26 43 73 0 41 0.00 0 0 \N \N
83063 21727 15 22 44 74 0 41 0.81 0 0 \N \N
34518 21728 1 26 43 73 0 41 0.00 0 0 \N \N
83064 21728 15 22 44 74 0 41 0.81 0 0 \N \N
27435 21729 355 375 45 75 0 41 0.00 0 0 \N \N
27437 21729 436 473 45 75 0 41 0.00 0 0 \N \N
27440 21729 482 519 45 75 0 41 0.00 0 0 \N \N
27443 21729 541 579 45 75 0 41 0.00 0 0 \N \N
83065 21729 6 17 44 74 0 41 2.13 0 0 \N \N
83066 21729 370 407 44 74 0 41 2.15 0 0 \N \N
83067 21729 437 458 44 74 0 41 2.44 0 0 \N \N
83068 21729 493 514 44 74 0 41 2.50 0 0 \N \N
83069 21729 537 548 44 74 0 41 1.90 0 0 \N \N
83070 21729 685 697 44 74 0 41 2.26 0 0 \N \N
83071 21729 711 735 44 74 0 41 2.42 0 0 \N \N
116158 21729 96 103 42 72 0 41 0.00 0 0 \N \N
116159 21729 239 250 42 72 0 41 1.00 0 0 \N \N
130111 21729 6 256 41 71 0 41 55.45 0 0 \N \N
161528 21729 87 108 40 70 0 41 911.00 4.44e-16 0 \N \N
161530 21729 206 223 40 70 0 41 585.00 0.000000000263 0 \N \N
161532 21729 240 258 40 70 0 41 576.00 0.00000000000836 0 \N \N
161534 21729 290 311 40 70 0 41 833.00 4.44e-16 0 \N \N
217672 21729 55 341 49 79 373 41 576.30 1.3e-170 0 \N \N
242791 21729 4 365 71 101 0 41 0.00 8.4e-131 0 \N \N
83072 21730 3 16 44 74 0 41 1.78 0 0 \N \N
83073 21730 140 153 44 74 0 41 2.15 0 0 \N \N
83074 21730 442 469 44 74 0 41 1.89 0 0 \N \N
83075 21730 644 654 44 74 0 41 1.87 0 0 \N \N
83076 21730 1221 1235 44 74 0 41 2.15 0 0 \N \N
83077 21730 1250 1264 44 74 0 41 2.20 0 0 \N \N
83078 21731 194 211 44 74 0 41 1.95 0 0 \N \N
83079 21731 335 348 44 74 0 41 2.15 0 0 \N \N
83080 21731 637 664 44 74 0 41 1.89 0 0 \N \N
83081 21731 839 849 44 74 0 41 1.87 0 0 \N \N
83082 21732 33 61 44 74 0 41 2.68 0 0 \N \N
83083 21732 161 178 44 74 0 41 1.83 0 0 \N \N
83084 21732 375 396 44 74 0 41 1.93 0 0 \N \N
116160 21732 92 102 42 72 0 41 0.00 0 0 \N \N
130113 21732 235 252 41 71 0 41 3.00 0 0 \N \N
83085 21735 76 95 44 74 0 41 2.54 0 0 \N \N
83086 21735 104 122 44 74 0 41 2.65 0 0 \N \N
83087 21736 5 20 44 74 0 41 1.92 0 0 \N \N
83088 21737 47 65 44 74 0 41 2.35 0 0 \N \N
83089 21737 72 83 44 74 0 41 1.65 0 0 \N \N
83090 21737 110 125 44 74 0 41 2.42 0 0 \N \N
83091 21737 142 154 44 74 0 41 2.16 0 0 \N \N
83092 21737 166 177 44 74 0 41 2.08 0 0 \N \N
83093 21737 565 576 44 74 0 41 1.96 0 0 \N \N
116161 21737 309 316 42 72 0 41 0.00 0 0 \N \N
116162 21737 643 655 42 72 0 41 0.00 0 0 \N \N
217810 21737 223 296 49 79 87 41 121.00 1.5e-33 0 \N \N
217811 21737 576 849 49 79 418 41 -74.00 0.0000085 0 \N \N
242841 21737 573 848 71 101 0 41 0.00 3e-50 0 \N \N
242842 21737 216 351 71 101 0 41 0.00 1.2e-41 0 \N \N
27455 21738 193 213 45 75 0 41 0.00 0 0 \N \N
83094 21738 256 267 44 74 0 41 2.12 0 0 \N \N
130115 21738 14 116 41 71 0 41 8.92 0 0 \N \N
217326 21738 15 117 49 79 106 41 28.00 0.000015 0 \N \N
217327 21738 210 257 49 79 56 41 106.00 4.7e-29 0 \N \N
242845 21738 13 115 71 101 0 41 0.00 3e-17 0 \N \N
83095 21739 44 56 44 74 0 41 2.19 0 0 \N \N
130117 21739 144 201 41 71 0 41 9.70 0 0 \N \N
217297 21739 141 168 49 79 29 41 4.40 1.7 0 \N \N
217298 21739 176 204 49 79 29 41 12.70 0.15 0 \N \N
242846 21739 117 207 71 101 0 41 0.00 0.0000000004 0 \N \N
27374 21716 76 99 45 75 0 41 0 0 0 \N \N \N \N
217249 21716 47 151 49 79 PF000001 41 87.1 8.2e-25 0 \N \N \N \N
242732 21716 80 160 71 101 0 41 0 0.000000000032 0 \N \N \N \N
217179 21717 1 94 49 79 PF000019 41 99.1 3.3e-28 0 \N \N \N \N
242734 21717 3 91 71 101 0 41 0 0.0000000000000017 0 \N \N \N \N
217309 21718 76 201 49 79 PF000019 41 118.9 8.9e-34 0 \N \N \N \N
242735 21718 1 185 71 101 0 41 0 0.00000000000003 0 \N \N \N \N
27378 21719 90 117 45 75 0 41 0 0 0 \N \N \N \N
83043 21719 21 41 44 74 0 41 2.37 0 0 \N \N \N \N
242736 21719 76 124 71 101 0 41 0 0.0017 0 \N \N \N \N
24545 21720 79 101 46 76 0 41 0 0 0 \N \N \N \N
24546 21720 106 123 46 76 0 41 0 0 0 \N \N \N \N
24547 21720 138 155 46 76 0 41 0 0 0 \N \N \N \N
24548 21720 192 214 46 76 0 41 0 0 0 \N \N \N \N
83044 21720 37 59 44 74 0 41 2.67 0 0 \N \N \N \N
116148 21720 93 100 42 72 0 41 0 0 0 \N \N \N \N
83051 21721 24 37 44 74 0 41 2.3 0 0 \N \N \N \N
83052 21721 170 184 44 74 0 41 1.97 0 0 \N \N \N \N
83053 21721 212 235 44 74 0 41 2.47 0 0 \N \N \N \N
242779 21721 47 146 71 101 0 41 0 0.002 0 \N \N \N \N
83045 21722 135 149 44 74 0 41 1.97 0 0 \N \N \N \N
83046 21722 171 187 44 74 PF000001 41 1.66 0 0 \N \N \N \N
83047 21722 217 230 44 74 0 41 1.09 0 0 \N \N \N \N
83048 21722 361 376 44 74 0 41 2.44 0 0 \N \N \N \N
83049 21722 470 482 44 74 0 41 2.2 0 0 \N \N \N \N
83050 21722 512 520 44 74 0 41 0.76 0 0 \N \N \N \N
116149 21722 347 358 42 72 0 41 0 0 0 \N \N \N \N
116150 21723 268 290 42 72 0 41 1 0 0 \N \N \N \N
116151 21723 377 389 42 72 0 41 1 0 0 \N \N \N \N
130095 21723 144 241 41 71 0 41 26.88 0 0 \N \N \N \N
130097 21723 78 138 41 71 0 41 19.62 0 0 \N \N \N \N
161506 21723 144 158 40 70 0 41 394 0.00000981 0 \N \N \N \N
161508 21723 165 175 40 70 0 41 321 0.0000259 0 \N \N \N \N
161510 21723 177 188 40 70 0 41 288 0.00000103 0 \N \N \N \N
161512 21723 194 204 40 70 0 41 295 0.0000486 0 \N \N \N \N
161514 21723 215 229 40 70 0 41 349 0.0000007 0 \N \N \N \N
161516 21723 81 91 40 70 0 41 266 0.0000318 0 \N \N \N \N
161518 21723 95 110 40 70 0 41 334 0.000000138 0 \N \N \N \N
161520 21723 111 120 40 70 0 41 225 0.0222 0 \N \N \N \N
161522 21723 124 136 40 70 0 41 341 0.00000182 0 \N \N \N \N
161524 21723 83 103 40 70 0 41 565 0.00000000711 0 \N \N \N \N
161526 21723 103 119 40 70 0 41 188 0.099 0 \N \N \N \N
217502 21723 83 138 49 79 58 41 98.9 6.4e-27 0 \N \N \N \N
217503 21723 146 228 49 79 79 41 150.9 1.5e-42 0 \N \N \N \N
217504 21723 264 513 49 79 294 41 260.8 1.2e-75 0 \N \N \N \N
242780 21723 244 526 71 101 0 41 0 2.3e-79 0 \N \N \N \N
242781 21723 138 282 71 101 0 41 0 1.3e-33 0 \N \N \N \N
242782 21723 81 162 71 101 0 41 0 2.5e-22 0 \N \N \N \N
24549 21724 263 285 46 76 0 41 0 0 0 \N \N \N \N
24550 21724 329 351 46 76 0 41 0 0 0 \N \N \N \N
24551 21724 361 383 46 76 0 41 0 0 0 \N \N \N \N
24552 21724 396 418 46 76 0 41 0 0 0 \N \N \N \N
24553 21724 433 455 46 76 0 41 0 0 0 \N \N \N \N
24554 21724 483 505 46 76 0 41 0 0 0 \N \N \N \N
24555 21724 515 537 46 76 0 41 0 0 0 \N \N \N \N
24556 21724 550 572 46 76 0 41 0 0 0 \N \N \N \N
24557 21724 587 609 46 76 0 41 0 0 0 \N \N \N \N
83054 21724 270 275 44 74 0 41 0.92 0 0 \N \N \N \N
83055 21724 326 335 44 74 0 41 1.97 0 0 \N \N \N \N
83056 21724 367 378 44 74 0 41 2.05 0 0 \N \N \N \N
83057 21724 513 529 44 74 0 41 2.42 0 0 \N \N \N \N
217569 21724 37 583 49 79 600 41 1244.7 0 0 \N \N \N \N
242783 21724 3 576 71 101 0 41 0 0.0058 0 \N \N \N \N
27431 21725 113 133 45 75 0 41 0 0 0 \N \N \N \N
83058 21725 30 40 44 74 0 41 1.87 0 0 \N \N \N \N
83059 21725 109 135 44 74 0 41 2.49 0 0 \N \N \N \N
217397 21725 146 331 49 79 324 41 84.5 1.4e-22 0 \N \N \N \N
83060 21726 369 397 44 74 0 41 2.53 0 0 \N \N \N \N
83061 21726 417 432 44 74 0 41 2.3 0 0 \N \N \N \N
83062 21726 443 458 44 74 0 41 2.43 0 0 \N \N \N \N
116152 21726 70 92 42 72 0 41 1 0 0 \N \N \N \N
116153 21726 100 120 42 72 0 41 1 0 0 \N \N \N \N
116154 21726 129 149 42 72 0 41 1 0 0 \N \N \N \N
116155 21726 158 178 42 72 0 41 1 0 0 \N \N \N \N
116156 21726 193 213 42 72 0 41 0 0 0 \N \N \N \N
116157 21726 221 242 42 72 0 41 1 0 0 \N \N \N \N
130099 21726 68 97 41 71 0 41 14.81 0 0 \N \N \N \N
130101 21726 98 125 41 71 0 41 11.68 0 0 \N \N \N \N
130103 21726 127 154 41 71 0 41 9.56 0 0 \N \N \N \N
130105 21726 156 183 41 71 0 41 9.54 0 0 \N \N \N \N
130107 21726 191 218 41 71 0 41 12.09 0 0 \N \N \N \N
130109 21726 219 247 41 71 0 41 11.28 0 0 \N \N \N \N
217476 21726 68 94 49 79 24 41 12.8 0.29 0 \N \N \N \N
217477 21726 100 122 49 79 24 41 25.3 0.000092 0 \N \N \N \N
217478 21726 129 151 49 79 24 41 19.7 0.0045 0 \N \N \N \N
217479 21726 158 180 49 79 24 41 19.2 0.0063 0 \N \N \N \N
217480 21726 193 215 49 79 24 41 22.9 0.00049 0 \N \N \N \N
217481 21726 221 244 49 79 24 41 24 0.00023 0 \N \N \N \N
242784 21726 80 124 71 101 0 41 0 0.0000000015 0 \N \N \N \N
242785 21726 205 245 71 101 0 41 0 0.0000000075 0 \N \N \N \N
242786 21726 58 85 71 101 0 41 0 0.0011 0 \N \N \N \N
34517 21727 1 26 43 73 0 41 0 0 0 \N \N \N \N
83063 21727 15 22 44 74 0 41 0.81 0 0 \N \N \N \N
34518 21728 1 26 43 73 0 41 0 0 0 \N \N \N \N
83064 21728 15 22 44 74 0 41 0.81 0 0 \N \N \N \N
27435 21729 355 375 45 75 0 41 0 0 0 \N \N \N \N
27437 21729 436 473 45 75 0 41 0 0 0 \N \N \N \N
27440 21729 482 519 45 75 0 41 0 0 0 \N \N \N \N
27443 21729 541 579 45 75 0 41 0 0 0 \N \N \N \N
83065 21729 6 17 44 74 0 41 2.13 0 0 \N \N \N \N
83066 21729 370 407 44 74 0 41 2.15 0 0 \N \N \N \N
83067 21729 437 458 44 74 0 41 2.44 0 0 \N \N \N \N
83068 21729 493 514 44 74 0 41 2.5 0 0 \N \N \N \N
83069 21729 537 548 44 74 0 41 1.9 0 0 \N \N \N \N
83070 21729 685 697 44 74 0 41 2.26 0 0 \N \N \N \N
83071 21729 711 735 44 74 0 41 2.42 0 0 \N \N \N \N
116158 21729 96 103 42 72 0 41 0 0 0 \N \N \N \N
116159 21729 239 250 42 72 0 41 1 0 0 \N \N \N \N
130111 21729 6 256 41 71 0 41 55.45 0 0 \N \N \N \N
161528 21729 87 108 40 70 0 41 911 4.44e-16 0 \N \N \N \N
161530 21729 206 223 40 70 0 41 585 0.000000000263 0 \N \N \N \N
161532 21729 240 258 40 70 0 41 576 0.00000000000836 0 \N \N \N \N
161534 21729 290 311 40 70 0 41 833 4.44e-16 0 \N \N \N \N
217672 21729 55 341 49 79 373 41 576.3 1.3e-170 0 \N \N \N \N
242791 21729 4 365 71 101 0 41 0 8.4e-131 0 \N \N \N \N
83072 21730 3 16 44 74 0 41 1.78 0 0 \N \N \N \N
83073 21730 140 153 44 74 0 41 2.15 0 0 \N \N \N \N
83074 21730 442 469 44 74 0 41 1.89 0 0 \N \N \N \N
83075 21730 644 654 44 74 0 41 1.87 0 0 \N \N \N \N
83076 21730 1221 1235 44 74 0 41 2.15 0 0 \N \N \N \N
83077 21730 1250 1264 44 74 0 41 2.2 0 0 \N \N \N \N
83078 21731 194 211 44 74 0 41 1.95 0 0 \N \N \N \N
83079 21731 335 348 44 74 0 41 2.15 0 0 \N \N \N \N
83080 21731 637 664 44 74 0 41 1.89 0 0 \N \N \N \N
83081 21731 839 849 44 74 0 41 1.87 0 0 \N \N \N \N
83082 21732 33 61 44 74 0 41 2.68 0 0 \N \N \N \N
83083 21732 161 178 44 74 0 41 1.83 0 0 \N \N \N \N
83084 21732 375 396 44 74 0 41 1.93 0 0 \N \N \N \N
116160 21732 92 102 42 72 0 41 0 0 0 \N \N \N \N
130113 21732 235 252 41 71 0 41 3 0 0 \N \N \N \N
83085 21735 76 95 44 74 0 41 2.54 0 0 \N \N \N \N
83086 21735 104 122 44 74 0 41 2.65 0 0 \N \N \N \N
83087 21736 5 20 44 74 0 41 1.92 0 0 \N \N \N \N
83088 21737 47 65 44 74 0 41 2.35 0 0 \N \N \N \N
83089 21737 72 83 44 74 0 41 1.65 0 0 \N \N \N \N
83090 21737 110 125 44 74 0 41 2.42 0 0 \N \N \N \N
83091 21737 142 154 44 74 0 41 2.16 0 0 \N \N \N \N
83092 21737 166 177 44 74 0 41 2.08 0 0 \N \N \N \N
83093 21737 565 576 44 74 0 41 1.96 0 0 \N \N \N \N
116161 21737 309 316 42 72 0 41 0 0 0 \N \N \N \N
116162 21737 643 655 42 72 0 41 0 0 0 \N \N \N \N
217810 21737 223 296 49 79 87 41 121 1.5e-33 0 \N \N \N \N
217811 21737 576 849 49 79 418 41 -74 0.0000085 0 \N \N \N \N
242841 21737 573 848 71 101 0 41 0 3e-50 0 \N \N \N \N
242842 21737 216 351 71 101 0 41 0 1.2e-41 0 \N \N \N \N
27455 21738 193 213 45 75 0 41 0 0 0 \N \N \N \N
83094 21738 256 267 44 74 0 41 2.12 0 0 \N \N \N \N
130115 21738 14 116 41 71 0 41 8.92 0 0 \N \N \N \N
217326 21738 15 117 49 79 106 41 28 0.000015 0 \N \N \N \N
217327 21738 210 257 49 79 56 41 106 4.7e-29 0 \N \N \N \N
242845 21738 13 115 71 101 0 41 0 3e-17 0 \N \N \N \N
83095 21739 44 56 44 74 0 41 2.19 0 0 \N \N \N \N
130117 21739 144 201 41 71 0 41 9.7 0 0 \N \N \N \N
217297 21739 141 168 49 79 29 41 4.4 1.7 0 \N \N \N \N
217298 21739 176 204 49 79 29 41 12.7 0.15 0 \N \N \N \N
242846 21739 117 207 71 101 0 41 0 0.0000000004 0 \N \N \N \N
......@@ -476,7 +476,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=163 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=165 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -663,6 +663,8 @@ CREATE TABLE `protein_feature` (
`perc_ident` float DEFAULT NULL,
`external_data` text COLLATE latin1_bin,
`hit_description` text COLLATE latin1_bin,
`cigar_line` text COLLATE latin1_bin,
`align_type` enum('ensembl','cigar','cigarplus','vulgar','mdtag') COLLATE latin1_bin DEFAULT NULL,
PRIMARY KEY (`protein_feature_id`),
UNIQUE KEY `aln_idx` (`translation_id`,`hit_name`,`seq_start`,`seq_end`,`hit_start`,`hit_end`,`analysis_id`),
KEY `translation_idx` (`translation_id`),
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:13:57 2017
-- Created on Fri Jan 12 13:37:38 2018
--
BEGIN TRANSACTION;
......@@ -736,7 +736,9 @@ CREATE TABLE protein_feature (
evalue double precision,
perc_ident float,
external_data text,
hit_description text
hit_description text,
cigar_line text,
align_type enum
);
CREATE UNIQUE INDEX aln_idx ON protein_feature (translation_id, hit_name, seq_start, seq_end, hit_start, hit_end, analysis_id);
......
1 \N schema_version 91
1 \N schema_version 92
2 1 assembly.default NCBI34
33 1 species.classification Chordata
32 1 species.classification Vertebrata
......@@ -93,3 +93,5 @@
142 \N patch patch_90_91_b.sql|align_type
143 \N patch patch_90_91_c.sql|protein_align_type
144 \N patch patch_90_91_d.sql|remove_external_data
145 \N patch patch_91_92_a.sql|schema_version
146 \N patch patch_91_92_b.sql|add_cigar_line_align_type
......@@ -476,7 +476,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=145 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=147 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -663,6 +663,8 @@ CREATE TABLE `protein_feature` (
`perc_ident` float DEFAULT NULL,
`external_data` text COLLATE latin1_bin,
`hit_description` text COLLATE latin1_bin,
`cigar_line` text COLLATE latin1_bin,
`align_type` enum('ensembl','cigar','cigarplus','vulgar','mdtag') COLLATE latin1_bin DEFAULT NULL,
PRIMARY KEY (`protein_feature_id`),
UNIQUE KEY `aln_idx` (`translation_id`,`hit_name`,`seq_start`,`seq_end`,`hit_start`,`hit_end`,`analysis_id`),
KEY `translation_idx` (`translation_id`),
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:14:08 2017
-- Created on Fri Jan 12 13:37:50 2018
--
BEGIN TRANSACTION;
......@@ -736,7 +736,9 @@ CREATE TABLE protein_feature (
evalue double precision,
perc_ident float,
external_data text,
hit_description text
hit_description text,
cigar_line text,
align_type enum
);
CREATE UNIQUE INDEX aln_idx ON protein_feature (translation_id, hit_name, seq_start, seq_end, hit_start, hit_end, analysis_id);
......
1 \N schema_version 91
1 \N schema_version 92
2014 1 species.classification Haplorrhini
40 1 assembly.default GRCh37
41 1 assembly.date 2009-02
......@@ -98,3 +98,5 @@
2105 \N patch patch_90_91_b.sql|align_type
2106 \N patch patch_90_91_c.sql|protein_align_type
2107 \N patch patch_90_91_d.sql|remove_external_data
2108 \N patch patch_91_92_a.sql|schema_version
2109 \N patch patch_91_92_b.sql|add_cigar_line_align_type
......@@ -476,7 +476,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=2108 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=2110 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -663,6 +663,8 @@ CREATE TABLE `protein_feature` (
`perc_ident` float DEFAULT NULL,
`external_data` text COLLATE latin1_bin,
`hit_description` text COLLATE latin1_bin,
`cigar_line` text COLLATE latin1_bin,
`align_type` enum('ensembl','cigar','cigarplus','vulgar','mdtag') COLLATE latin1_bin DEFAULT NULL,
PRIMARY KEY (`protein_feature_id`),
UNIQUE KEY `aln_idx` (`translation_id`,`hit_name`,`seq_start`,`seq_end`,`hit_start`,`hit_end`,`analysis_id`),
KEY `translation_idx` (`translation_id`),
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:14:18 2017
-- Created on Fri Jan 12 13:38:03 2018
--
BEGIN TRANSACTION;
......@@ -736,7 +736,9 @@ CREATE TABLE protein_feature (
evalue double precision,
perc_ident float,
external_data text,
hit_description text
hit_description text,
cigar_line text,
align_type enum
);
CREATE UNIQUE INDEX aln_idx ON protein_feature (translation_id, hit_name, seq_start, seq_end, hit_start, hit_end, analysis_id);
......
1 \N schema_version 91
1 \N schema_version 92
2 1 assembly.default MULTIMAP
3 1 species.taxonomy_id 1
4 1 assembly.mapping chromosome:MULTIMAP#contig
......@@ -54,3 +54,5 @@
147 \N patch patch_90_91_b.sql|align_type
148 \N patch patch_90_91_c.sql|protein_align_type
149 \N patch patch_90_91_d.sql|remove_external_data
150 \N patch patch_91_92_a.sql|schema_version
151 \N patch patch_91_92_b.sql|add_cigar_line_align_type
......@@ -476,7 +476,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=150 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=152 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -663,6 +663,8 @@ CREATE TABLE `protein_feature` (
`perc_ident` float DEFAULT NULL,
`external_data` text COLLATE latin1_bin,
`hit_description` text COLLATE latin1_bin,
`cigar_line` text COLLATE latin1_bin,
`align_type` enum('ensembl','cigar','cigarplus','vulgar','mdtag') COLLATE latin1_bin DEFAULT NULL,
PRIMARY KEY (`protein_feature_id`),
UNIQUE KEY `aln_idx` (`translation_id`,`hit_name`,`seq_start`,`seq_end`,`hit_start`,`hit_end`,`analysis_id`),
KEY `translation_idx` (`translation_id`),
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:14:26 2017
-- Created on Fri Jan 12 13:38:11 2018
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Mon Sep 25 13:14:36 2017
-- Created on Fri Jan 12 13:38:22 2018
--
BEGIN TRANSACTION;
......@@ -736,7 +736,9 @@ CREATE TABLE protein_feature (
evalue double precision,
perc_ident float,
external_data text,
hit_description text
hit_description text,
cigar_line text,
align_type enum
);