ENSCORESW-2805: remove aliases as not useful

misc-scripts/xref_mapping/xref_config.ini

@@ -2451,7 +2451,6 @@ data_uri        = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_assoc
 #                                                                      #
 # Keys:                                                                #
 #   taxonomy_id - taxonomy ID of species/strain (multiple, required)   #
-#   aliases     - comma-separated list of aliases (optional)           #
 #   source      - sources used for this species/strain                 #
 #                 (multiple, required)                                 #
 #                                                                      #
@@ -2482,7 +2481,6 @@ source          = ArrayExpress::MULTI
 
 [species homo_sapiens]
 taxonomy_id     = 9606
-aliases         = homosapiens, hsapiens, human
 source          = CCDS::homo_sapiens
 source          = DBASS3::homo_sapiens
 source          = DBASS5::homo_sapiens
@@ -2494,7 +2492,6 @@ source          = UCSC::homo_sapiens
 
 [species mus_musculus]
 taxonomy_id     = 10090
-aliases         = mmusculus, mouse, musmusculus
 source          = CCDS::mus_musculus
 source          = EntrezGene::MULTI
 source          = MGI::mus_musculus#01
@@ -2504,24 +2501,20 @@ source          = UCSC::mus_musculus
 
 [species danio_rerio]
 taxonomy_id     = 7955
-aliases         = danio, daniorerio, drerio, zebrafish
 source          = ZFIN_ID::danio_rerio#01
 source          = ZFIN_ID::danio_rerio#03
 
 [species rattus_norvegicus]
 taxonomy_id     = 10116
-aliases         = rat, rattusnorvegicus, rnorvegicus
 source          = RGD::rattus_norvegicus
 source          = RGD::rattus_norvegicus#02
 
 [species bos_taurus]
 taxonomy_id     = 9913
-aliases         = bostaurus, btaurus, cow
 source          = VGNC::bos_taurus
 
 [species canis_familiaris]
 taxonomy_id     = 9615
-aliases         = canisfamiliaris, cfamiliaris, dog, doggy
 source          = VGNC::canis_familiaris
 
 [species equus_caballus]
@@ -2530,18 +2523,15 @@ source          = VGNC::equus_caballus
 
 [species pan_troglodytes]
 taxonomy_id     = 9598
-aliases         = pantroglodytes, ptroglodytes, chimpanzee, chimp
 source          = VGNC::pan_troglodytes
 
 [species ciona_intestinalis]
 taxonomy_id     = 7719
-aliases         = cintestinalis, cionaintestinalis, seasquirt
 source          = cint_aniseed_v1::ciona_intestinalis
 source          = cint_jgi_v1::ciona_intestinalis
 
 [species xenopus_tropicalis]
 taxonomy_id     = 8364
-aliases         = pipid, pipidfrog, xenopus, xenopustropicalis, xtropicalis
 source          = Xenopus_Jamboree::xenopus_tropicalis
 
 ########################################################################
@@ -2573,62 +2563,50 @@ source          = misc_EG::EG
 
 [species drosophila_melanogaster]
 taxonomy_id     = 7227
-aliases         = dmelanogaster, drosophila, drosophilamelanogaster
 source          = flybase_gene_id::drosophila_melanogaster
 
 [species drosophila_pseudoobscura]
 taxonomy_id     = 46245
-aliases         = dpseudoobscura, drosophila, drosophilapseudoobscura
 source          = flybase_gene_id::drosophila_pseudoobscura
 
 [species drosophila_ananassae]
 taxonomy_id     = 7217
-aliases         = dananassae, drosophila, drosophilaananassae
 source          = flybase_gene_id::drosophila_ananassae
 
 [species drosophila_erecta]
 taxonomy_id     = 7220
-aliases         = derecta, drosophila, drosophilaerecta
 source          = flybase_gene_id::drosophila_erecta
 
 [species drosophila_grimshawi]
 taxonomy_id     = 7222
-aliases         = dgrimshawi, drosophila, drosophilagrimshawi
 source          = flybase_gene_id::drosophila_grimshawi
 
 [species drosophila_mojavensis]
 taxonomy_id     = 7230
-aliases         = dmojavensis, drosophila, drosophilamojavensis
 source          = flybase_gene_id::drosophila_mojavensis
 
 [species drosophila_persimilis]
 taxonomy_id     = 7234
-aliases         = dpersimilis, drosophila, drosophilapersimilis
 source          = flybase_gene_id::drosophila_persimilis
 
 [species drosophila_sechellia]
 taxonomy_id     = 7238
-aliases         = dsechellia, drosophila, drosophilasechellia
 source          = flybase_gene_id::drosophila_sechellia
 
 [species drosophila_simulans]
 taxonomy_id     = 7240
-aliases         = dsimulans, drosophila, drosophilasimulans
 source          = flybase_gene_id::drosophila_simulans
 
 [species drosophila_virilis]
 taxonomy_id     = 7244
-aliases         = dvirilis, drosophila, drosophilavirilis
 source          = flybase_gene_id::drosophila_virilis
 
 [species drosophila_willistoni]
 taxonomy_id     = 7260
-aliases         = dwillistoni, drosophila, drosophilawillistoni
 source          = flybase_gene_id::drosophila_willistoni
 
 [species drosophila_yakuba]
 taxonomy_id     = 7245
-aliases         = dyakuba, drosophila, drosophilayakuba
 source          = flybase_gene_id::drosophila_yakuba
 
 ########################################################################
@@ -2659,14 +2637,12 @@ source          = misc_EG::EG
 [species saccharomyces_cerevisiae]
 taxonomy_id     = 4932
 taxonomy_id     = 559292
-aliases         = saccharomyces, saccharomycescerevisiae, scerevisiae, yeast
 source          = GO::saccharomyces_cerevisiae
 source          = SGD::saccharomyces_cerevisiae
 
 [species schizosaccharomyces_pombe]
 taxonomy_id     = 4896
 taxonomy_id     = 284812
-aliases         = schizosaccharomyces, schizosaccharomycespombe, spombe, fission yeast
 source          = PomBase::schizosaccharomyces_pombe
 
 ########################################################################
@@ -2693,23 +2669,19 @@ source      = misc_EG::EG
 
 [species glycine_max]
 taxonomy_id     = 3847
-aliases         = soybean, glycine max, glycinemax
 source          = PHYTOZOME_GMAX_GENE::glycine_max
 
 [species solanum_lycopersicum]
 taxonomy_id     = 4081
-aliases         = Solanum lycopersicum, Lycopersicon esculentum
 source          = Gramene_Pathway::solanum_lycopersicum
 
 [species solanum_tuberosum]
 taxonomy_id     = 4113
-aliases         = Solanum tuberosum
 source          = PGSC_GENE::solanum_tuberosum
 source          = Gramene_Pathway::solanum_tuberosum
 
 [species arabidopsis_thaliana]
 taxonomy_id = 3702
-aliases     = Arabidopsis thaliana,athaliana,arabidopsisthaliana,thale cress,thale-cress,mouse-ear cress
 source      = Gramene_Pathway::arabidopsis_thaliana
 source      = TAIR_LOCUS::arabidopsis_thaliana
 source      = CommunityGO::arabidopsis_thaliana
@@ -2718,24 +2690,20 @@ source      = PO_STRU::arabidopsis_thaliana
 
 [species brachypodium_distachyon]
 taxonomy_id = 15368
-aliases     = Brachypodium distachyon,bdistachyon,brachypodiumdistachyon
 source      = Gramene_Pathway::brachypodium_distachyon
 
 [species oryza_sativa]
 taxonomy_id = 39947
-aliases     = Oryza sativa,osativa,oryzasativa,rice,Japanese rice
 source      = Gramene_Pathway::oryza_sativa
 
 [species populus_trichocarpa]
 taxonomy_id = 3694
-aliases     = Populus trichocarpa,ptrichocarpa,populustrichocarpa,poplar,black cottonwood
 source      = Gramene_Pathway::populus_trichocarpa
 
 [species sorghum_bicolor]
 taxonomy_id = 4558
 taxonomy_id = 91525
 taxonomy_id = 171959
-aliases     = Sorghum bicolor,sbicolor,sorghumbicolor,sorghum,milo,broomcorn,shattercane,chicken cornSorghum bicolor subsp. verticilliflorum,Sorghum bicolor subsp. x drummondii
 source      = Gramene_Pathway::sorghum_bicolor
 
 [species zea_mays]
@@ -2745,12 +2713,10 @@ taxonomy_id = 381124
 taxonomy_id = 334825
 taxonomy_id = 4579
 taxonomy_id = 76912
-aliases     = Zea mays,zmays,zeamays,corn,maize
 source      = Gramene_Pathway::zea_mays
 
 [species gaeumannomyces_graminis]
 taxonomy_id     = 644352
-aliases         = ggraminis, gaeumannomyces_graminis, gaeumannomyces graminis, gaeumannomyces graminis var. tritici R3-111a-1
 source          = BROAD_Magnaporthe_DB::MULTI
 
 [species metazoa]
@@ -2774,52 +2740,42 @@ source          = misc_EG::EG
 
 [species caenorhabditis_elegans]
 taxonomy_id     = 6239
-aliases         = caenorhabditiselegans, celegans, elegans
 source          = wormbase::celegans
 
 [species caenorhabditis_briggsae]
 taxonomy_id     = 6238
-aliases         = caenorhabditis_briggae_prjna10731
 source          = wormbase::cbriggsae
 
 [species caenorhabditis_remanei]
 taxonomy_id     = 31234
-aliases         = caenorhabditis_remanei_prjna53967
 source          = wormbase::cremanei
 
 [species caenorhabditis_brenneri]
 taxonomy_id     = 135651
-aliases         = caenorhabditis_brenneri_prjna20035
 source          = wormbase::cbrenneri
 
 [species caenorhabditis_japonica]
 taxonomy_id     = 281687
-aliases         = caenorhabditis_japonica_prjna12591
 source          = wormbase::cjaponica
 
 [species brugia_malayi]
 taxonomy_id     = 6279
-aliases         = brugia_malayi_prjna10729
 source          = wormbase::bmalayi
 
 [species onchocerca_volvulus]
 taxonomy_id     = 6282
-aliases         = onchocerca_volvulus_prjeb513
 source          = wormbase::ovolvulus
 
 [species pristionchus_pacificus]
 taxonomy_id     = 54126
-aliases         = pristionchus_pacificus_prjna12644
 source          = wormbase::ppacificus
 
 [species strongyloides_ratti]
 taxonomy_id     = 34506
-aliases         = strongyloides_ratti_prjeb125
 source          = wormbase::sratti
 
 [species trichuris_muris]
 taxonomy_id     = 70415
-aliases         = trichuris_muris_prjeb126
 source          = wormbase::tmuris
 
 ########################################################################