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Commit 0d5effc0 authored by Glenn Proctor's avatar Glenn Proctor
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Added Anopheles_symbol to triage info for debugging

parent 52fd9556
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......@@ -1077,7 +1077,7 @@ sub dump_triage_data() {
open (XREF, ">>" . $self->core->dir() . "/xref.txt");
open (XREF_MISSED, ">" . $self->core->dir() . "/triage.txt");
foreach my $source ("%RefSeq%","UniProt%"){
foreach my $source ("%RefSeq%","UniProt%","Anopheles_symbol"){
my $sql = "select x.xref_id, x.accession, x.version, x.label, x.description, x.source_id, x.species_id from xref x, source s where s.name like '".$source."' and x.source_id = s.source_id";
my $sth = $self->xref->dbc->prepare($sql);
$sth->execute();
......@@ -1104,7 +1104,7 @@ sub dump_triage_data() {
else{
die "type=*".$type."*\n".$failed_xref_mappings{$xref_id}."\n";
}
print XREF_MISSED " (".$t_perc."\%) which are below there respective cutoffs off $q_cut\% and $t_cut\%.\n";
print XREF_MISSED " (".$t_perc."\%) which are below their respective cutoffs off $q_cut\% and $t_cut\%.\n";
}
else{
print XREF_MISSED ($xref_id+$xref_id_offset) . "\t$accession no match to Ensembl\n";
......
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