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Commit 0e6e9b10 authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
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Honour the exonerate_concurrent_jobs setting in the config file

(defaults to 200).
parent 49f4f620
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......@@ -482,9 +482,13 @@ sub run_exonerate {
$self->logger->info("Submitting $num_jobs exonerate jobs to lsf.\n");
$self->logger->debug("$exonerate_job\n\n");
my $bsub_cmd = sprintf( "|bsub -J%s[1-%d] -o %s/exonerate.%%I.out %s",
$lsf_name, $num_jobs, $logpath,
$self->conf()->param('lsf_opt_exonerate') );
my $bsub_cmd = sprintf(
"|bsub -J%s[1-%d]%%%d -o %s/exonerate.%%I.out %s",
$lsf_name,
$num_jobs,
$self->conf()->param('exonerate_concurrent_jobs') || 200,
$logpath,
$self->conf()->param('lsf_opt_exonerate') );
local *BSUB;
open( BSUB, $bsub_cmd )
......
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